Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02897 ATGGATCGCAAGAGGGGCAGGCCTGAAGCTGCCTTCAACGCCAATGGCGGCGCCAAGAAATCCCGCCCAGAAACGGACTCCTTTCCATCTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACATCTGGCTGTCCATTTGGTGAAGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCTGTCTCTCAGCTGATCAATGTTAGTAGCAATCCTGCTATTCCTCAAGGTGGTGGTAGAAATCCTGTTCCACCATCCTTCCCAGATGGGTCGTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACAGCTGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGAAGGCCTACGGTCCCATCATATGAAGATCCCCGTGGCTTGGGACAAATGCAAAGCAGAAGGGTTGGTGGGCGAATTGAGCCCCCAATTCCAGCTCATGGAGCTGCTGGCGGCTTTGGAGCCTCGGCTACTGCAAAAATTAGTATCAATGCTTCACTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATATGTCGTGCAACAGGAGCCAAACTTTCCATAAGGGATCATGATTCAGATCCTAACCTTAGAAACATTGAACTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCACGAACTTATTCTAAATGTCAGTTCTGCATCTGGGCCTCCAATGAAAAGCATTACTACACAGAGTTCTGCTGCCCCGTCAAACAACTTCAAGACTAAGCTATGTGAAAACTTTGCTAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCACATGGAGCTGATGAATTGCGCAAGCCTGGAATCTGA 900 0.4722 MDRKRGRPEAAFNANGGAKKSRPETDSFPSGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVSSNPAIPQGGGRNPVPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPSYEDPRGLGQMQSRRVGGRIEPPIPAHGAAGGFGASATAKISINASLAGAVIGKNGVNSKQICRATGAKLSIRDHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSASGPPMKSITTQSSAAPSNNFKTKLCENFAKGSCTFGERCHFAHGADELRKPGI 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02897 299 SMART kh_6 171 241 IPR004087 GO:0003676
Cca02g02897 299 SUPERFAMILY CCCH zinc finger 264 295 IPR036855 GO:0046872
Cca02g02897 299 Pfam KH domain 175 237 IPR004088 GO:0003723
Cca02g02897 299 MobiDBLite consensus disorder prediction 1 37 - -
Cca02g02897 299 Gene3D - 262 296 - -
Cca02g02897 299 Gene3D - 95 132 - -
Cca02g02897 299 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 298 - -
Cca02g02897 299 CDD KH-I 176 237 - -
Cca02g02897 299 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Cca02g02897 299 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 298 - -
Cca02g02897 299 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Cca02g02897 299 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Cca02g02897 299 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Cca02g02897 299 SUPERFAMILY CCCH zinc finger 98 131 IPR036855 GO:0046872
Cca02g02897 299 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Cca02g02897 299 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Cca02g02897 299 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Cca02g02897 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Cca02g02897 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 290 IPR000571 GO:0046872
Cca02g02897 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 243 IPR036612 GO:0003723
Cca02g02897 299 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Cca02g02897 299 Gene3D K Homology domain, type 1 167 261 IPR036612 GO:0003723
Cca02g02897 299 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02897 Cca-Chr2 50410584 50415071 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca02g02897 KH_1 1.9e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02897 - - gmx:100818781 540.036