Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02894 ATGGAAAGTTCTTCAGGTTCTAGCGAAATCATGTTTGCATTGGACGCAGCGAAACGCGCCAGGCACGAAGAAAATGTTCACAAGTTCAAAGGCGTTGTGCCTCAACAAAATGGTAACTGGGGTGCACAAATATATGCAAACCACCAAAGAATCTGGTTAGGGACATTCAAATCCGAAAGAGAGGCTGCAATGGCTTACGACAGCGCCACCATAAAACTCAGAAGCGGAGAATGCCACAGAAACTTTCCATGGAACGATCAAACAGTTCAAGAGCCTAAGTTTCAAAGCCATTACAGCGCAGAAACAGTGCTTAGCATGATCAGAGATGGCACCTACCCTTCAAACTTTGCCACGTTTCTCAGCACTCACCAACCCCAGCAAAGCCTTGCAAAACACATAAGTTTGAAGGGTGATGAACAGTTTTGCTGCACCCAACTTTTTCAGAAGGAATTAACACCAAGTGATGTGGGGAAGCTGAACAGGCTTGTGATCCCTAAGAAACACGCGGTTACGTATTTTCCTTACGCGAATGATGAGAGTGTTGACATGGAGGTTGTGTTTTACGACAAACTGATGCGGTTGTGGAAGTTTCGCTACTGCTATTGGAAGAGCAGCCAAAGTTACGTGTTCACTAGAGGCTGGAACCGCTTTGTCAAGGATAGGAAATTGAAGGCTAAAGATGTGGTTGCTTTTTTTATCTGTGAACCTATGAGTTGGGCAAAGGGAGAAGCGTTTTCAATGATCGATGTAGTCTataataataataataataataataataatGCAGTAGATCATGAGAGAAGCCAGTGTTTTGGAGAGAGCAAGAAAGACACCAAACAAATTTTAGGATGtgaagatgaagatgaagatgaagatgaagatgaagatgaGAATGAAAATAGGGATGGAAACATTGGAAAGGATTTGAGTTCACAAAAGGGTTTGAGGCTCTTTGGTGTGTGTATCTCCTGA 972 0.4105 MESSSGSSEIMFALDAAKRARHEENVHKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGECHRNFPWNDQTVQEPKFQSHYSAETVLSMIRDGTYPSNFATFLSTHQPQQSLAKHISLKGDEQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPYANDESVDMEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDRKLKAKDVVAFFICEPMSWAKGEAFSMIDVVYNNNNNNNNNAVDHERSQCFGESKKDTKQILGCEDEDEDEDEDEDENENRDGNIGKDLSSQKGLRLFGVCIS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02894 323 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Cca02g02894 323 ProSiteProfiles B3 DNA-binding domain profile. 147 254 IPR003340 GO:0003677
Cca02g02894 323 ProSiteProfiles AP2/ERF domain profile. 28 83 IPR001471 GO:0003700|GO:0006355
Cca02g02894 323 Gene3D - 143 263 IPR015300 -
Cca02g02894 323 MobiDBLite consensus disorder prediction 272 309 - -
Cca02g02894 323 CDD B3_DNA 146 231 IPR003340 GO:0003677
Cca02g02894 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 323 IPR044800 GO:0003700
Cca02g02894 323 SMART B3_2 147 248 IPR003340 GO:0003677
Cca02g02894 323 Pfam AP2 domain 28 74 IPR001471 GO:0003700|GO:0006355
Cca02g02894 323 Pfam B3 DNA binding domain 147 231 IPR003340 GO:0003677
Cca02g02894 323 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 5 323 - -
Cca02g02894 323 MobiDBLite consensus disorder prediction 284 299 - -
Cca02g02894 323 SUPERFAMILY DNA-binding pseudobarrel domain 145 237 IPR015300 -
Cca02g02894 323 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Cca02g02894 323 Gene3D AP2/ERF domain 27 84 IPR036955 GO:0003700|GO:0006355
Cca02g02894 323 SMART rav1_2 28 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02894 Cca-Chr2 50400535 50401506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02894 25 256 RAV Transcription Factor Family AT1G51120 54.962 2.18e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca02g02894 B3 8e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02894 K09287 - gmx:102660503 458.759