Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02893 ATGAGAGGTTCGCGCAGAGGCAACGGCAATGGCAAAGATGCCGAGCAGAAAGAGGCGAGCGAGCAGAACCCCGCCACTCGCAGGATCATACGCTCCCAGTTCCTCAAACTCAAGACTCTCATCAATGACAAAAGAGACGATTTGTTGAACACGGACAGCAGCAAATTCGACACCATCTTGGATGAGTTCGACAAGTTACACGATCAAGTTGAGAAGCCGAGAGAGCAGGTTGCAGATGCGGAGGCGCTGTTGGATCTCACGCGCACTCTGGTGGGATCTGTTAGGTCTTTAGCGAACGAGGGTGTCACCCCTTCACAATTTGTTTCCTCTTTGCTCATACACTATGGTCAAGCCCAAGACTCAATCGACTGGCAGAAACTTGGCCTTGCTGTGTCCCCAATTTTCCTTTCGGTTCATGGCTCTTCTACCATGCTTGGTCCCATGGACAATCAGTTAAAGCAGCGCAAAGTAGGAGTGCGCAGAACTCGTGATTCCCGCCCAGCTACAATTACTAGGCCCCAACAGCTTGATGAGGCTGTGACAGAGGAAAAGACTGATACGGACAAAAACATGGCGACTATGTTTGACATCTTAAGGAGGGCAAAGCGTGTACGGCTTGAAAACCTAATTATGAACAAGACGTCTTTTGCTCAGACTGTGGAAAACTTGTTTGCCCTGTCATTCCTAGTGAAAGATGGTCGTGCTGAGATTAGTCTGGATGAAGATCGTTCACACTATGTTTGTAAGATTGTGTTTCCACTTCAATCAACTGAATACTTGTTTCAGTTTCTTTTTTTGTACAATGGATACTTACGCTGTCTTCTTTTCAGCACCTAA 837 0.4719 MRGSRRGNGNGKDAEQKEASEQNPATRRIIRSQFLKLKTLINDKRDDLLNTDSSKFDTILDEFDKLHDQVEKPREQVADAEALLDLTRTLVGSVRSLANEGVTPSQFVSSLLIHYGQAQDSIDWQKLGLAVSPIFLSVHGSSTMLGPMDNQLKQRKVGVRRTRDSRPATITRPQQLDEAVTEEKTDTDKNMATMFDILRRAKRVRLENLIMNKTSFAQTVENLFALSFLVKDGRAEISLDEDRSHYVCKIVFPLQSTEYLFQFLFLYNGYLRCLLFST 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02893 278 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g02893 278 PANTHER UNCHARACTERIZED 9 247 IPR027786 GO:0005634|GO:0006281|GO:0030915
Cca02g02893 278 MobiDBLite consensus disorder prediction 1 26 - -
Cca02g02893 278 Pfam Nse4 C-terminal 204 247 IPR014854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02893 Cca-Chr2 50396165 50398925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02893 27 265 Non-SMC Element family AT1G51130 50.394 1.58e-79 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02893 K22825 - gmx:100792117 401.749