LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g02888	ATGATTGTTACTATTCTTATTTGTGCCACCGTTATCCTTCTCCCCTTGGTGCAAGTGCCATACGTCTCTGCTCAGACTCGGAATAATGTTAGCGTTGGTGAGACACTTGTTGCAGGTAACGTTGGTGCGCAATGGCTTTCTTCATCAAAGGAGATTGCATTTGGATTTCATCAGCTTGAGAATGACCTTTTCTTGCTTGCCATATGGTACCAAAAAATACCAAACGATAATTTGATTTGGTATGCAAATGGAGACAACCCGGCTCCTAAAGGATCAAAACTTGAGCTAAATGAATACAGCGGACTAATGCTGAATAGTCCTCAAGGTGTTGAGCTATGGACATCACAAACCATATCAGGTACAATTTCCTATGGACTAATAAATGACACAGGCAACTTCCAGCTTCTGGATAAGAATTCGCAGGTGTTGTGGGAAAGTTTCAGTAATCCAACTGATACATTGGTGCCAACTCAAATCATGGAGGTAAAAGGCACGCTTTCATCTCGGCAGAAAGAGACCAATTTCTCACAAGGAAGGTTCCGATTTCGCTTGCTTTTGAGTGGTAATGCTGTGCTTAATCCTGTTAATTTGCTTACCAAATATCCCTATGATGCTTATTACATCAGTTACACTTATGATAAGACCAACACAACGAACTCCGGTTACCGTGTGATTTTTGATAATTCGGGACTGTATATATTGAAGAGGAACGATAAGAGGGTTAATATTACAAATTCAAAAGACGTGCTCTCAACTGATTCCTATTATTACAGAGCAACCATCAATTTTGATGGAGTTTTCACCATATCCCGTTACCCAAAAAATCCAGGTCCAAATCCAGGCTGGACAGTTATTAAGACATTGCCAAACAACATTTGCACAGATTTGGCAGGACCAAAGGGTAGTGGTGTCTGTGGATTCAATAGTATCTGCACTCTTGATACTGATCAAAGACCAAAGTGCAAGTGCCCAGAAGGTTATTCTCTTCTTGATTCAACCGATGAGTATGGCAGCTGCAAAACAAATTTGGAACTCCGTTGTGAAGGAAGTGGACAAAGCTCTCAAGGAGATTTCTACTACATGGAGGAAATGCCAAATACTGATTGGCCTCTATCAGTTTATGAAATGTATAGACCTTACAATTCAGAGGATTGCAAGACTTCTTGCTTGCAAGACTGCTTATGCGCTGTTTCTGTTTATAGAAATGGTAGCTGCTGGAAGAAGAAGCTGCCTCTCTCAAATGGAAGACGGGATAAATCAGTAGGGGGATCTGCTTTTATTAAGTTGATGAAAAATGATACTTTGTCGGCAAGTCCTTCTAAGCCATTCCTAGAAGAGAACAAAAAAGGAAAAGATCAAGATACTTTGATAACTGTGATATCAGTCCTTCTAGGAGGTTCTGTCTTTGTGAATCTCATGCTGGTCAGTGCAGTATGTATCGGTTTCTACTTCAACAACAACAGAAGAAGTTCTATCAATAAAACTGTTGCAGAGAGCAATTTGCGCAGTTTCACCTTTGGAGAGCTTGTGCAAGCAACAAATAACTTCAAAGAAGAATTGGGAAGGGGGTCTTGTGGCATTGTCTTTAAAGGAACAACAGATTTGGTTACTATTGCAGTAAAGAAATTGGACAAGATGCTCAAAGACAACGATAAGGAATTCAAAACAGAAGTGAATGTGATTGGCCAAACTCATCACAAAAACTTGGTTCGCCTACTTGGATATTGTGATGAGGGAGAACACCGCATTCTGGTGTATGAGTTCATGAGCAATGGCAGTTTAGCAAACTTCATCTTCGGAGATTTCAAACCAAAATGGTACCAAAGAGTCCAGATTGCCGTTGGGATTGCAAGAGGGTTGGTTTACTTGCACGAGGAATGCTGCACCCAGATCATACATTGTGACATAAAGCCACAAAATATACTTCTTGATGAGCTTTACAACGCAAGAATATCAGATTTTGGGTTGTCAAAGCTACTAAGGATTAATCAAAGCCGCACAGAAACTGGCATTCGAGGAACAAGAGGGTATGTTGCACCAGAATGGTTCAGGAGTGCACCAATCACTGCCAAGGTTGATGTTTACAGTTTTGGAGTGCTGCTTGTGGAGATCATTTGCTGCAGGAGAAATGTAGAAGGTGACATTGGCAATGATGAGAAGGCAATTTTAACTGATTGGGTTTATGATTGCTACAAGGATGGAAGAGTTGCCGTACTGGTTGAAAATGATGATGAGGCTATCAATGACATAAATATGCTCGAAAGGTTTGTGAAGGCAGCTATTTGGTGCCTTCAAGAGGATCCCTCTCTAAGGCCAACAATGAAGAAGGTGATGCTGATGTTGGAAGGAATAGCTCCAGTCACAGTTCCACCAAGCCCCTGTCCTTATGCTTCTGTGTCTGTTAGTTGCGGTTGA	2415	0.4112	MIVTILICATVILLPLVQVPYVSAQTRNNVSVGETLVAGNVGAQWLSSSKEIAFGFHQLENDLFLLAIWYQKIPNDNLIWYANGDNPAPKGSKLELNEYSGLMLNSPQGVELWTSQTISGTISYGLINDTGNFQLLDKNSQVLWESFSNPTDTLVPTQIMEVKGTLSSRQKETNFSQGRFRFRLLLSGNAVLNPVNLLTKYPYDAYYISYTYDKTNTTNSGYRVIFDNSGLYILKRNDKRVNITNSKDVLSTDSYYYRATINFDGVFTISRYPKNPGPNPGWTVIKTLPNNICTDLAGPKGSGVCGFNSICTLDTDQRPKCKCPEGYSLLDSTDEYGSCKTNLELRCEGSGQSSQGDFYYMEEMPNTDWPLSVYEMYRPYNSEDCKTSCLQDCLCAVSVYRNGSCWKKKLPLSNGRRDKSVGGSAFIKLMKNDTLSASPSKPFLEENKKGKDQDTLITVISVLLGGSVFVNLMLVSAVCIGFYFNNNRRSSINKTVAESNLRSFTFGELVQATNNFKEELGRGSCGIVFKGTTDLVTIAVKKLDKMLKDNDKEFKTEVNVIGQTHHKNLVRLLGYCDEGEHRILVYEFMSNGSLANFIFGDFKPKWYQRVQIAVGIARGLVYLHEECCTQIIHCDIKPQNILLDELYNARISDFGLSKLLRINQSRTETGIRGTRGYVAPEWFRSAPITAKVDVYSFGVLLVEIICCRRNVEGDIGNDEKAILTDWVYDCYKDGRVAVLVENDDEAINDINMLERFVKAAIWCLQEDPSLRPTMKKVMLMLEGIAPVTVPPSPCPYASVSVSCG	804

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g02888	804	SUPERFAMILY	alpha-D-mannose-specific plant lectins	64	152	IPR036426	-
	Cca02g02888	804	Gene3D	Transferase(Phosphotransferase) domain 1	589	788	-	-
	Cca02g02888	804	Gene3D	-	22	149	IPR036426	-
	Cca02g02888	804	Pfam	D-mannose binding lectin	79	163	IPR001480	-
	Cca02g02888	804	PANTHER	MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN	26	803	-	-
	Cca02g02888	804	Gene3D	-	150	288	-	-
	Cca02g02888	804	Pfam	Protein kinase domain	516	778	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca02g02888	804	CDD	PAN_AP_plant	345	429	-	-
	Cca02g02888	804	CDD	STKc_IRAK	520	784	-	-
	Cca02g02888	804	Gene3D	Phosphorylase Kinase; domain 1	479	588	-	-
	Cca02g02888	804	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	26	803	-	-
	Cca02g02888	804	SMART	serkin_6	514	788	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca02g02888	804	ProSiteProfiles	Bulb-type lectin domain profile.	21	148	IPR001480	-
	Cca02g02888	804	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	631	643	IPR008271	GO:0004672\|GO:0006468
	Cca02g02888	804	PIRSF	SRK	1	803	IPR024171	GO:0004674
	Cca02g02888	804	SUPERFAMILY	Protein kinase-like (PK-like)	488	782	IPR011009	-
	Cca02g02888	804	SMART	blect_4	27	150	IPR001480	-
	Cca02g02888	804	ProSiteProfiles	Protein kinase domain profile.	514	784	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g02888	Cca-Chr2	50362161	50364754	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g02888	482	783	Receptor kinase-like Gene Family	AT1G60800	41.935	1.36e-69	238

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Cca02g02888		Pkinase	3.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g02888	-		-	gmx:100811299	1320.45