Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02887 ATGAGTGTTACTATTCTTGTTTGTGCTACTGTTATCCTTCTCCCCTTGCTGCAAGTGCCACACGTCTCTGCTCAGACTCAGAATAATGTTACCATTGGTGAGACACTTGTTGCAGGAAACGTTGGTGCGCAATGGCTTTCTTCATCAAAGGAGATTGCATTCGGATTTCATCAGCTTGAGAATGACCTTTTCTTGCTTGCCATATGGTACCAAAAAGTACCAAACGATAATTTGATTTGGTATGCAAATGGAGACAACCCGGCTCCTAAAGGATCAAAACTTGAGCTAAATGAATACAGCGGACTAGTGCTGAAGAGTCCTCAAGGTGTTGAGCTATGGACATCACAAACCATATCAGGTACAATTTCCTATGGACTAATAAATGACACAGGCAACTTCCAGCTTCTGGATAAGAATTTGCAGGTGTTGTGGGAAAGTTTCAGTAATCCAACTGATACATTGGTGCCAACTCAAATCATGGAGGTAAAAGGCACGCTTTCTTCTCGACAGAAAGAGACAAATTTCTCACGAGGAAGGTTCCAATTTCGCTTGCTTCCGGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAACTATACTTATGATGCTTATTACATCAGTCACACATTTGATGGGACCAATACAACAAACTCCGGTTACCGTGTGATTTTTGATAATTCAGGATTGTATATATTGAAGAGGAGCGATGAGAGAGTTTATATTACAAATTCGAAAGATGAGCTCTCATCTGATTCCTATTATTACAGAGCAACCATCAATTTTGATGGAGTTTTCACCATATCTCGTTACCCAAAAAATCCAGGTTCAAATCCAGGCTGGACAGTTATTAAGACATTGCCAGACAACATTTGCACAGATTTGGTAGGAAAAAAGGGTAGTGGTGTCTGTGGATTCAATAGTATCTGCACTCTTGATACTGATCAAAGACCAAAGTGCAAGTGCCCAAAAGGTTATTCTCTTCTTGATTCAACCGATGAGTATGGCAGCTGCAAACCAAATTTGGAAGTCCGTTGTGAAGGAAGTGGACAAAGCTCTCAAGGAGATCTCTACTACATGGAGGAAATGCCAAATACTGATTGGCCAGAATTAGATTACGAATTGTATCAACCTTACAATTCAGAAGACTGCAAGACTTCTTGCCTGCAAGATTGTTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAGCTGCCTCTCTCAAATGGAAGACAGGATAGAGCAGTTGGGGGATCTGCTTTCATTAAGTTGATGAAAAATGATGTTTCGTCAGCAAATCCTTCAAATCCATTCCTTGAAGAGAAGAAAAATGGAAAAGATCAAGATACTTTGATAACTGTGATATCAGTCCTTCTAGGAGGTTCTGTCTTTGTGAATCTCATGCTGGTCAGTGCAGTATGTATCGGTTTCTATTTTTACTACAACAGAAGAAGTTCTACCAATAAAGCTGTTGCAGAGAGCAATTTGCGCAGTTTCACCTTTGGAGAGCTTGTGCAAGCAACAAATAACTTCAAAGAAGAATTGGGAAGGGGGTCTTGTGGCATTGTCTTTAAAGGAACAACAGATTTGGTTACTATTGCAGTAAAGAAATTGCACAAGATACTCAAAGACAGCGATAAGGAATTCAAAACAGAAGTGAATGTGATTGGACAAACTCATCACAAAAACTTGGTTCGCCTACTTGGATATTGTGATGAGGGAGAACACCGCATTCTGGTGTATGAGTTCATGAGCAATGGCACTTTAGCAAACTTCCTCTTCGGAGATTTCAAACCAAAATGGAACCAAAGAGTCCAGATTGCCGTTGGGATTGCAAGAGGGTTGGTTTACTTGCACGAGGAATGCTGCACCCAGATCATACATTGTGACATAAAGCCACAAAATATACTTCTTGATGAGCTTTACAACGCAAGAATATCAGATTTTGGGTTGTCAAAGCTACCCCAATATAATCTAGTACATGAAGTTGTTAGTAATATTGTATGTACAAGATAA 2031 0.3978 MSVTILVCATVILLPLLQVPHVSAQTQNNVTIGETLVAGNVGAQWLSSSKEIAFGFHQLENDLFLLAIWYQKVPNDNLIWYANGDNPAPKGSKLELNEYSGLVLKSPQGVELWTSQTISGTISYGLINDTGNFQLLDKNLQVLWESFSNPTDTLVPTQIMEVKGTLSSRQKETNFSRGRFQFRLLPDGNAVLNPINLPTNYTYDAYYISHTFDGTNTTNSGYRVIFDNSGLYILKRSDERVYITNSKDELSSDSYYYRATINFDGVFTISRYPKNPGSNPGWTVIKTLPDNICTDLVGKKGSGVCGFNSICTLDTDQRPKCKCPKGYSLLDSTDEYGSCKPNLEVRCEGSGQSSQGDLYYMEEMPNTDWPELDYELYQPYNSEDCKTSCLQDCLCAVSIFRDDSCWKKKLPLSNGRQDRAVGGSAFIKLMKNDVSSANPSNPFLEEKKNGKDQDTLITVISVLLGGSVFVNLMLVSAVCIGFYFYYNRRSSTNKAVAESNLRSFTFGELVQATNNFKEELGRGSCGIVFKGTTDLVTIAVKKLHKILKDSDKEFKTEVNVIGQTHHKNLVRLLGYCDEGEHRILVYEFMSNGTLANFLFGDFKPKWNQRVQIAVGIARGLVYLHEECCTQIIHCDIKPQNILLDELYNARISDFGLSKLPQYNLVHEVVSNIVCTR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02887 676 Gene3D Phosphorylase Kinase; domain 1 481 588 - -
Cca02g02887 676 Gene3D Transferase(Phosphotransferase) domain 1 589 676 - -
Cca02g02887 676 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 25 665 - -
Cca02g02887 676 Gene3D - 151 290 - -
Cca02g02887 676 SMART serkin_6 514 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02887 676 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 193 IPR036426 -
Cca02g02887 676 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 25 665 - -
Cca02g02887 676 Pfam D-mannose binding lectin 79 163 IPR001480 -
Cca02g02887 676 SMART blect_4 27 150 IPR001480 -
Cca02g02887 676 ProSiteProfiles Protein kinase domain profile. 514 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02887 676 Pfam Protein kinase domain 516 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02887 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Cca02g02887 676 Gene3D - 22 149 IPR036426 -
Cca02g02887 676 CDD PAN_AP_plant 351 429 - -
Cca02g02887 676 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Cca02g02887 676 SUPERFAMILY Protein kinase-like (PK-like) 494 671 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02887 Cca-Chr2 50355129 50357259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02887 343 676 Receptor kinase-like Gene Family AT4G04570 36.740 1.08e-45 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca02g02887 Pkinase 1.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02887 - - gmx:100811299 1124