Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02881 ATGCGTCGGTGGCTTTGTTGCACTTGTCAGGTGGAAGAGTCTTACCCATCAAACGAAAATGAACACCTGAAAAGCCCAAGGAGTTATGGGGATGGCAACCAAAAGGGCTCAAAGGTGTCAGCTCCTGTCAAGCCTGAAACACAAAAGGCACCACCACCTATTGAAGCTCCAGCACTATCTTTAGATGAGCTGAAGGAAAAGACTGACAACTTTGGTTCAAAGGCTTTAATTGGTGAAGGATCATATGGAAGGGTGTATTACGCAACCTTAAACAATGGAAAAGCAGTGGCTGTGAAGAAACTTGATGTTTCATCTGAACCCGAAACAAATAATGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGAAAATTTTGTTGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAATTTGCAACTATGGGCTCTCTTCATGACATACTACATGGTAGAAAGGGAGTTCAAGGCGCACAACCTGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTGGAATATTTGCATGAGAAAGTTCAACCAGCGATTATACACAGAGATATCAGATCAAGTAATGTGCTGATCTTTGAAGATTACAAGGCTAAGATAGCTGACTTTAACCTTTCTAATCAGGCCCCTGACATGGCTGCACGTCTTCATTCAACTCGTGTATTGGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACCATGCCTCGAGGACAGCAGAGTCTTGTCACATGGGCTACACCAAGATTAAGTGAAGATAAAGTGAAACAGTGTGTAGACCCAAAACTTAAGGGAGAATACCCCCCTAAAGGAGTTGCTAAGCTTGCAGCTGTTGCAGCACTGTGCGTGCAGTATGAAGCTGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGTCTCCTGCTGCTCCTGCACCGGAAAGTTGA 1092 0.4322 MRRWLCCTCQVEESYPSNENEHLKSPRSYGDGNQKGSKVSAPVKPETQKAPPPIEAPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEPETNNEFLTQVSMVSRLKNENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPAIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKSPAAPAPES 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02881 363 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 362 - -
Cca02g02881 363 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Cca02g02881 363 MobiDBLite consensus disorder prediction 15 56 - -
Cca02g02881 363 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02881 363 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 1 362 - -
Cca02g02881 363 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Cca02g02881 363 PIRSF ILK 21 358 - -
Cca02g02881 363 Pfam Protein tyrosine and serine/threonine kinase 76 349 IPR001245 GO:0004672|GO:0006468
Cca02g02881 363 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Cca02g02881 363 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Cca02g02881 363 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Cca02g02881 363 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02881 Cca-Chr2 50299713 50304463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02881 5 350 Receptor kinase-like Gene Family AT4G02010 46.132 8.11e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Cca02g02881 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02881 K13436 - gmx:100790016 705.286