Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02867 ATGGCTTCAACTTCTTGCGTTGGTAACACCTCATTACCCATGAAAGATGCAGCTTCGAGCTATCATGCATATCCCCTTCCTCTAGCAAAATATGAGGAGGTTATAGACAATTCCCAGCTTTTCATGTTTACCTTGGAAAAGCTTCATGCATCTATGGGTACCAAGTTCATGATTCCTATTGTTGGAGGAAGAGAACTAGATTTACATCGCCTCTTCATTGAAGTGACATCCCGAGGAGGGATTGCCAAAATAATTAGAGAGAGGAAATGGAAAGATGTAACTTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCGTCTTTTGTGTTGCGGAAGTACTATGCTTCATTGCTTTACCATTACGAACAGATCTACTATTTTAAAGCCCGTGAATGGGACCCTACTGCTCCTGATGTTTTGCAGAATCAATCAACCCTGCCAGTTCCTCCTCCAAAAATGCAGTTTCCGCAGCCTTTGTCAGAAATTCAACCAGTTGCGTTTCAACACTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAGCATCTTCGGCAGGGTCTCCAGTCATTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATCGGTTCGGAGAAACTCAAAGGTGTACTTTATCAAGCTCCACAGACCCCTGGTTTGCCAGCATCCCATCACAGTGCCTCAGCTAATACCAACAATGCTTCTGCTTCATCGGGTGTCCATCGTCGGCGACGCAGGAAGAAATCAGAAATAAAGAGGAGGGATCCTGCTCATCCAAAACCAAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAACTAGTTCACCATGGGAAGGATAGAGAGATTAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAGGAATCGGAAAAAACGGTTTATCAAGAGAAGGCCATGAAGGATAAGGAGAGGTACAGAGCAGAAATGGAAGATTATCGGGAGAGACAGAGGATGGGCCAAGTTATAAGTGATGCTGTGCCGCTTCAACAAAGACTTCCTGAACCAGATACAGATATGATGGATGTTGACATGAAAATGGATGAAGCTGAGGGAGATTCTCCTCAAACTCCAGAAGAGAGCAGTTCTGGTGGAAGTGACTATGAAGATTATAACAAAACTGCAGAGAGAGGTTTTGATATGGATGCATTGCCTGTTATAGGAGTGGGGGCTGAAACAAGCTATTTGGGTTCAGAAGAGAAGTCATCCAAGGGGGGTTTATGA 1278 0.4311 MASTSCVGNTSLPMKDAASSYHAYPLPLAKYEEVIDNSQLFMFTLEKLHASMGTKFMIPIVGGRELDLHRLFIEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAREWDPTAPDVLQNQSTLPVPPPKMQFPQPLSEIQPVAFQHSNVNAAKLPEAMAASSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQTPGLPASHHSASANTNNASASSGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLVHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYRERQRMGQVISDAVPLQQRLPEPDTDMMDVDMKMDEAEGDSPQTPEESSSGGSDYEDYNKTAERGFDMDALPVIGVGAETSYLGSEEKSSKGGL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02867 425 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Cca02g02867 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Cca02g02867 425 SMART bright_3 36 127 IPR001606 GO:0003677
Cca02g02867 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 401 - -
Cca02g02867 425 Gene3D - 28 136 IPR036431 GO:0003677
Cca02g02867 425 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Cca02g02867 425 SMART ARID_2 32 122 - -
Cca02g02867 425 MobiDBLite consensus disorder prediction 224 271 - -
Cca02g02867 425 SUPERFAMILY ARID-like 36 134 IPR036431 GO:0003677
Cca02g02867 425 Coils Coil 314 334 - -
Cca02g02867 425 Gene3D High mobility group box domain 249 343 IPR036910 -
Cca02g02867 425 MobiDBLite consensus disorder prediction 363 401 - -
Cca02g02867 425 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Cca02g02867 425 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Cca02g02867 425 SMART hmgende2 264 333 IPR009071 -
Cca02g02867 425 CDD HMGB-UBF_HMG-box 265 329 - -
Cca02g02867 425 SUPERFAMILY HMG-box 253 336 IPR036910 -
Cca02g02867 425 MobiDBLite consensus disorder prediction 225 244 - -
Cca02g02867 425 MobiDBLite consensus disorder prediction 245 259 - -
Cca02g02867 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02867 Cca-Chr2 50040539 50045021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02867 1 365 ARID Transcription Factor Family AT1G04880 59.211 2.46e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca02g02867 ARID 9.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02867 - - gmx:100783284 746.888