Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02852 ATGCCATTGCGAGCTCGCACCGCAACTCCAAGTCTCTTGTGGTCTCTGCACACTGTTTTCAACCCTTCTCCCATTCACCTCAACTTTCATTCTCTGTCTCTGGCTAAACCCCAGTTTTCTGGCAATTGCGATGATTTTTTGCCATGGCTGGAGCGGAAAGCTGGTTCTAGGATTTCCTCCTCACTTTTCATCGGAGAATCTTCATATGGAAGGTCTCTGTTTGCTTCTAAGATAATTCGATCAGGAGAGTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCGGATAATCTTCTTCCTGAAATCAAATCTTTGCTTGCTGAGGATGTTGGAAATATTTCGAAACTTGCCATTCTTATTCTGATTGAGAAGAAATTGGGTCAGGGCTCTGAATGGTATCCTTATATCAGCTGTCTTCCACAGCAAGGGGGGCTGCATAATACGGTATTTTGGAATGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCTGGAAACTATCGTCCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGTCTGTTTTTGAATGTTTCCATCAAAGTTTTGGAGATTTTACTTACAAGGACTTCGTGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAACACAAAAGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGAGTTTCAGAAGCAATTGTAATGAGCGATGATGACAAACAATGCTCAGAAATTATCGCTGATCGTGATTATGCCCCTGGGGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACGATTCCATACAACATTTATGATCAGGTTCAGATCCAGTTTGATATACCTAAGCATGATCCTTTGCATGACATGAAGTTGGAACTCTTGCATCGATACTTTGTACCTCCACCTGAAGATATAAAGGGCTTGACATATCCCGTGAATTCCTTCAGTATCAATATTTGGCTATCTGATGGAGGCTGTGATCTCATAGGGAGGTGA 1044 0.408 MPLRARTATPSLLWSLHTVFNPSPIHLNFHSLSLAKPQFSGNCDDFLPWLERKAGSRISSSLFIGESSYGRSLFASKIIRSGECILKVPYRVQITADNLLPEIKSLLAEDVGNISKLAILILIEKKLGQGSEWYPYISCLPQQGGLHNTVFWNESELEMIRPSSVYLETIVQKSQIEKDFLAIKSVFECFHQSFGDFTYKDFVHACTLVGSRAWGNTKGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLHDMKLELLHRYFVPPPEDIKGLTYPVNSFSINIWLSDGGCDLIGR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02852 347 Pfam SET domain 70 267 IPR001214 GO:0005515
Cca02g02852 347 SUPERFAMILY SET domain 42 285 IPR046341 -
Cca02g02852 347 Gene3D - 283 335 IPR036464 -
Cca02g02852 347 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 40 329 - -
Cca02g02852 347 PANTHER OS01G0976450 PROTEIN 40 329 - -
Cca02g02852 347 CDD SET_RBCMT 65 281 IPR044431 GO:0016279|GO:0018022
Cca02g02852 347 Gene3D set domain protein methyltransferase, domain 1 39 280 - -
Cca02g02852 347 ProSiteProfiles SET domain profile. 56 267 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02852 Cca-Chr2 49917693 49925285 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca02g02852 SET 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02852 K19199 - gmx:100818002 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02852 02 49917693 49925285 Cca02g02852 02 49917693 49925285 ECH