Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02848 ATGTCATCTCGCATTGCCACGGAGAATGCTCAACCGCTCACCAATGCCACGCCGCCGCCCTATTTCGACCTAATGGAACTCGACCACCTCTCGCGCAGCTCTGTCTCCGCCGAGATGCCCACACTCGGCCAGCTCCTCAAGCACGTTGGAGACGCGCGGAAGGAAGCCACCGGCGACGGCAGCCAAACGCCGCTGCACCACGCGCTCGACATAACCGACGACGCCCGAATCAACCCTAGCTCGTTGCCGTTCGTCCTCTCCTTCAGCAACCTCACCTACAGCGTCAAGGTGCGCCGCAAAATAAGTCTCTCCACAATCTTTCAgcgccggcgcggcggcgcggcgacggcgacggtggcggGAACTCCTGGCGTGGAGGAGAGCACGTTCACGCGGACGAAGACGCTGCTGAACGACATCTCCGGCGAGGCGCGCGACGGCGAGATCATGGCGGTCCTCGGCGCTAGCGGTTCGGGGAAGTCGACGCTAATCGACGCGCTGGCGAACCGAATCGCCAAGGGAAGTTTGAAAGGCAAAGTGGCGCTGAACGGCGAGGCGCTTGAGTCGCGTCTCCTGAAGGTGATTTCCGCGTACGTGATGCAAGACGACCTCCTCTTCCCAATGCTCACCGTGGAAGAGACTCTCATGTTCGCGGCGGAGTTCCGACTTCCGCGCACGCTCTCCAAGTCGAAGAAAAAAGCACGTGTCCAGGCTCTCATCGACCAGCTAGGGCTCCGGAACGCGGCGAAGACGGTCATCGGCGACGAAGGCCACCGCGGAGTCTCCGGAGGCGAGCGGCGGAGAGTGTCAATCGGCACGGACATAATCCACGACCCGATCCTACTCTTCCTGGACGAGCCAACCTCCGGACTCGACTCCACTAGCGCTTACATGGTTGTGAAGGTGCTTCAGAGAATCGCGCAGAGCGGAAGCATCGTGATCATGTCCATTCATCAACCTAGTTACCGAATCCTAGGGCTTCTTGACCGCATGATCTTCCTATCCCGCGGCCAAACCGTTTACAGCGGTTCGCCGACGCAGTTGCCGGTTTTCTTCGCGGAGTTCGGTCATCCGATTCCAGAAAGCGATAACCGAACAGAGTTCGCGTTGGACATCATTCGCGAACTGGAAGGCTCCCCCGGCGGAACGAAGAGCTTGGTTGAGTTCAACAAGTCGTGGCAGAGCATGACAAAGCACAACCAAGAAACGACGACGGACGCCGAACGAAACGGCGGCTTGTCGTTGAAGGAAGCAATAAGCGCTAGTATTTCCAGAGGGAAACTGGTGTCCGGCGCCACCAATACTGGCCCGAACGCGTCGTCTATGGTGCCGACGTTCGCGAATCCGTTTTGGGTTGAGATGGCGACGCTGTCGAAACGGTCGCTTATGAATTCTCGTAGAATGCCTGAACTGTTCGGGACTCGATTGGGCACGGTGATGGTGACAGGGTTCATTCTGGCCACCATGTTTTGGCGACTGGACAACTCTCCGAAAGGAGTGCAAGAGAGGCTGGGATTCTACGCGTTTGCCATGTCAACCACTTTTTACACCACCGCCGACGCGCTTCCCGTGTTTCTCCAAGAGCGTTACATTTTCATGAGGGAAACTGCTTACAACGCCTATCGGAGATTGTCGTATTTGGTCTCGCATGCGCTGGTGGCGTTGCCTTCCTTGGCGTTTCTCTCGCTGGCGTTTGCGGCAACCACCTTTTGGGCCGTGGGCCTGGACGGGAGCTTCTTCTTTTACTTTCTCATAATATTCGCTTCCTTTTGGGCCGGGAACTCTTTCGTGACGTTTCTCTCGGGCGTGGTGCCTCACGTGATGTTGGGTTACACCATCGTGGTTGCCATTCTTGCCTACTTCTTGCTCTTCAGCGGATTCTTCGTGAACAGGGATAGGATTCCGAATTACTGGATTTGGTTCCACTACTTGTCGCTGGTGAAGTACCCTTACGAAGCTGTTCTCCAGAACGAGTTCGATGAGACCACCAAGTGCTTCGTCAGAGGGGTGCAGATCTTCGACAGCACGCCTCTCGCCTCGGTGCCGGAGGCTCTGAAGGTGAAGCTCTTGGAGAGCATGAGCAACACGCTGGGCACCAACATCACCACCTCCACGTGTTTGACCACGGGCGTCGATGTGTTGCACCAGAACGCCGTTACCGATTTGACCAAGTGGAACTGCTTCTGGATCACTGTGGCTTGGGGATTCTTCTTCAGGTTCCTCTTCTACTTGTCATTGTTGCTCGGAAGCAAGAACAAGAGGAGGTGA 2268 0.5551 MSSRIATENAQPLTNATPPPYFDLMELDHLSRSSVSAEMPTLGQLLKHVGDARKEATGDGSQTPLHHALDITDDARINPSSLPFVLSFSNLTYSVKVRRKISLSTIFQRRRGGAATATVAGTPGVEESTFTRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGKVALNGEALESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPTQLPVFFAEFGHPIPESDNRTEFALDIIRELEGSPGGTKSLVEFNKSWQSMTKHNQETTTDAERNGGLSLKEAISASISRGKLVSGATNTGPNASSMVPTFANPFWVEMATLSKRSLMNSRRMPELFGTRLGTVMVTGFILATMFWRLDNSPKGVQERLGFYAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRLSYLVSHALVALPSLAFLSLAFAATTFWAVGLDGSFFFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFVNRDRIPNYWIWFHYLSLVKYPYEAVLQNEFDETTKCFVRGVQIFDSTPLASVPEALKVKLLESMSNTLGTNITTSTCLTTGVDVLHQNAVTDLTKWNCFWITVAWGFFFRFLFYLSLLLGSKNKRR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02848 755 Pfam ABC transporter 137 289 IPR003439 GO:0005524
Cca02g02848 755 ProSitePatterns ABC transporters family signature. 261 275 IPR017871 GO:0005524
Cca02g02848 755 Pfam ABC-2 type transporter 456 659 IPR013525 GO:0016020|GO:0140359
Cca02g02848 755 SMART AAA_5 146 338 IPR003593 -
Cca02g02848 755 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 749 - -
Cca02g02848 755 Pfam ABC-2 type transporter 318 379 IPR043926 GO:0140359
Cca02g02848 755 Gene3D - 127 350 IPR027417 -
Cca02g02848 755 PANTHER ABC TRANSPORTER G FAMILY MEMBER 6-LIKE 20 749 - -
Cca02g02848 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 348 IPR027417 -
Cca02g02848 755 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 120 361 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02848 Cca-Chr2 49873095 49875937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02848 136 321 Calmodulin-binding Proteins AT2G36910 30.688 1.74e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02848 K05681 - gmx:100803658 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02848 02 49873095 49875937 Cca02g02848 02 49873095 49875937 ECH