Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02835 ATGGTGGGGATGTTACCATACGACGACGTTGATTCCAACTTGAGAGCCATGGCCGGTCGCGCCGAGGGTTTCGGCCGCAACGCCATCGGTGGCCTTCACGGTTCTGTCTATTCCGTCACCACCCTTGCAGATGATGGGCCTGGATCCCTTCGTGAAGGATGTCGTAGAAAGGAACCGTTGTGGATTGTTTTTGAGGTTTCTGGCACCATTCATCTTTCATCATACCTCAGTGTCTCATCTTATAAGACAATTGATGGCAGAGGGCAGAGGATCAAATTCACTGGGAAGGGTTTGAGGCTCAAAGAATGTGAGCACATCATTGTATGCAACCTTGAGTTTGAGGGTGGTAGGGGCCATGATGTTGATGGCATTCAGATCAAACCCAATTCTAGGCACATTTGGATTGATCGATGCAGCCTTCGTGATTATGATGATGGCCTCATTGACATTACAAGACAAAGCACTGATATTACCATATCTAGGTGTTACTTTGCACAGCATGACAAGACCATGCTGATCGGAGCTGACCCAACTCACGTTGGTGATAGGTGCATCCGGGTGACCATTCACCATTGTTTCTTTGATGGAACACGGCAAAGACAGCCTCGTGTGAGATTTGGAAAAGTTCATCTCTACAACAATTACACCAGAAATTGGGCGATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATACTCTCAGTGTAACATATATGAAGCGGCAACCAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCAGCAGATAAGGAAGAGCAGAAGACTGGGTTTATAATATCAGAAGGAGACATGTTTCTGAATGGTGCTCAGCCATGCTCGGTTACTGAAAAGATAGAAGAGTCAATGTTCCATCCTAGTGAATATTACCCGACATGGACTATGGAAGCTGCTCAACATTCTCTCAGAGATGTGCTCCGGTTATGTACAGGTTGGCAAGGCATCACTAGGCCAATAGATCAAATGGTCCTTAATTGA 999 0.4545 MVGMLPYDDVDSNLRAMAGRAEGFGRNAIGGLHGSVYSVTTLADDGPGSLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWAIYAVCASVESQIYSQCNIYEAATKKKTFEFYTEKAADKEEQKTGFIISEGDMFLNGAQPCSVTEKIEESMFHPSEYYPTWTMEAAQHSLRDVLRLCTGWQGITRPIDQMVLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02835 332 PANTHER PECTATE LYASE 18-RELATED 4 326 IPR045032 GO:0030570
Cca02g02835 332 SMART amb_all 32 245 IPR002022 -
Cca02g02835 332 PANTHER PECTATE LYASE 4 326 - -
Cca02g02835 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Cca02g02835 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Cca02g02835 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Cca02g02835 332 SUPERFAMILY Pectin lyase-like 18 303 IPR011050 -
Cca02g02835 332 Pfam Pectate lyase 76 238 IPR002022 -
Cca02g02835 332 Gene3D - 6 312 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02835 Cca-Chr2 49743381 49746165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02835 42 330 Polysaccharide Lyase AT3G55140 80.277 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02835 K01728 - gmx:100802068 619.387