Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02834 ATGGCGAGGATCAAGGTTTACGAACTGAGGCAGAAGACGAAGGCTGAGCTGTTGAATCAGCTGAAGGACCTAAAGGCGGAGCTTGCCTTGCTTCGTGTCGCTAAGGTCACCGGAGGTGCCCCTAACAAGCTCTCCAAGATAAAGGTGGTGAGGTTGTCGATTGCGCAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCTGCGTTGAGGGATGCCTATAAGAACAAGAAGTACTTGCCTCTTGATCTGCGCCCTAAGAAGACTAGGGCTATTCGCAGAAGGCTTACCAAGCACCAGGCATCATTGAAGACAGAGAAGCAGAAGAAGAAAGAGACATATTTCCCAATGAGGAAATATGCTATCAAGggattaccgtttctgttagacccaatctctattgTGTGGATTAGAAGGGATGATTTGAAGCTACGAATAGCATGGAAATGCGGTGAAATTAAGTTGGGGAAAATTTGGAGTCGTTGGCATGTGCCATCAAATGATCTGGAAAATCGCGTGGTCCAAGCAAGCATGTTAACACTCAATGGGGAAAACAAACCAATTAAAGAAGTCTACACCAAAACATCATGGCACTAG 594 0.436 MARIKVYELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALRDAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEKQKKKETYFPMRKYAIKGLPFLLDPISIVWIRRDDLKLRIAWKCGEIKLGKIWSRWHVPSNDLENRVVQASMLTLNGENKPIKEVYTKTSWH 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02834 197 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cca02g02834 197 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cca02g02834 197 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca02g02834 197 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 122 - -
Cca02g02834 197 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca02g02834 197 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Cca02g02834 197 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca02g02834 197 CDD Ribosomal_L29_HIP 8 64 - -
Cca02g02834 197 Gene3D - 78 123 - -
Cca02g02834 197 Coils Coil 7 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02834 Cca-Chr2 49737974 49742625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02834 1 122 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 86.885 5.86e-70 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02834 K02918 - gmx:100801539 224.942