Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02824 ATGATGGTTTCCAGGGGACTGTTCGGCTGGTCCCCGCCGCACATACAGCCACTCACGCCCGTGTCCGAGGTGTCGGAGCCACCGGAGTCGCCGTCGCCGTACCTCGACCTCGGCGCCGAGACCTCCGCCTCGCAGCCGATggaggtcgaggaggagatggaggaggccgacgagATTGAGCCGCCGCCCGCCGCCGTGCCTTTCTCCCGCCTCTTCGCCTGCTCCGACCGCCTCGACTGGTTTCTCATGCTCGTCGGTTCCCTCGCCGCCGCCGCGCACGGCACCGCTCTCGTCGTTTACTTGCACTACTTCGCCAAGGTTCTCCGGGTCCCTCAGCAGGGTTCCGCGGAggagcagtttcacaggttcaaggagCTTGCTTTAACCATTGTTTATATTGCTGGGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACTGGAGAACGGCAGACTGCGGTCATCAGATCAAAATATGTCCAAGTATTACTTAACCAAGATATGAGTTTTTTTGACACTTACGGAAATAATGGAGATATTGTGAGTCAAGTATTGAGTGATGTGCTGCTCATTCAATCTGCTCTCAGTGAAAAGGTTGGGAATTATATTCATAATATGGCAACGTTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACACTAGCTACAGGTCCATTTATTGTGGCTGCAGGAGGAATATCAAATATATTCCTCCACAGGCTTGCTGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGCATTGCTGAACAGCAGGCAGTTTCCTATATACGGACCTTGTATGCCTTTACAAATGAAACATTGGCTAACTATTCATATGCAACATCACTGCTAGCTACTCTTAGATATGGTATATTAATAAGCCTTGCTCAAGAGCTTGGTCTTGGTTTTACGTATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGCTCTTGGTTATTCATGAAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATTTGAGATGATAAGTCGATCACCATCATCTTTTAATCATGATGGCAGTGCTCCAGCTTCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCTAAAAAAGCTGTGGCACTCGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCCCTCATGGAGAGGTTCTATGATCCAACATTAGGGGAAGTTCTTTTAGATGGTGAAAATATCAAGAATATGAAACTGGAATGGCTAAGGAGCCAAATAGGACTGGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGAGATACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACACACCTTTATCAGCTCATTAGATAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGCTTTGACAGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTTTAAATCCATCTATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTGGATCTCCTCATGTTGGGACGCTCGACGATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCTGTTATGGAGGATGGTCAACTTGTTGAAATGGGTACTCATGATGAGTTACTGACCCTGGATGGATTATATGCAGAGCTTCTTCGATGTGAAGAGGCTACAAAACTTCCCAAAAGGATGCCTGTTCGAAACTACAAGGAGACTGCAACTTTCCAAATTGAGAAAGATTCTTCAGAAAGTCATAGCTTCAAAGAACCTTCATCTCCTAAAATGAGAAAGTCACCCTCTCTGCAAAGAGTTTCTGCTGTATTTCGGCCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAGTTCGGAGCCCACCATCTGAGAAGATGATAGAAAATGGCCAGTCTTTAGATTCAGCTGATAAGGAGCCATCAATAAAAAGGCAAGATAGTTTTGAAATGAGACTACCAGAGTTACCTAAGATTGATGTTCAGTGTGTGCATCGACAAGCATCAAATGGTTCTGACCCGGAATCCCCTGTTTCACCTCTTTTAACGTCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGCAGGCCTGATAGTCATTCTGACGATCTTTCAGTGAAAATGAGTGAAACAAAGGATGCAAGGCATCGGAAACAACCCTCAATTTGGAGGCTAGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCACAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGCCTTGTGGTTACAGATTACTATAAAATTGATGATGCTCATCACTTACGAAGGGAGATAGACAAATGGTGCTTGATCATTGCCTGCATGGGTATTGTGACAGTTGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAACTGGATGGTTTGATGAAGAGGAAAATAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTGCGAGCGGCTTTCAGTAACCGACTTTCCATATTTATACAGGACAGTGCTGCAATTATTGTTGCTTTTCTCATAGGTGTTTTGCTGCACTGGCGATTAGCACTCGTGGCTTTAGCAACACTTCCAGTTCTCTGTGTTTCTGCTGTTGCCCAGAAATTGTGGCTTGCTGGATTTTCAAAGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTTGTTGCATTCTGTGCTGGTAACAAGGTGATGGAACTGTATCAGTTGCAGTTAAATAAAATATTTAAGCAAAGCTTTCTTCATGGAGTGGCCATTGGttttgcatttggcttttcacagtttctgctttttgcttGTAATGCCCTTCTACTTTGGTACACTGCAATATGTGTAAAAAAGAGCTATGTTGATCCACCTACTGCTCTGAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCCCTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAGCGACGTAAATCTCTCATGTCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCTCTGAAGCCACCCAATGTATATGGAAGCATCGAGTTGAAAAATGTTGATTTTTGTTATCCTTCTCGACCAGAAGTGTTGGTATTAAGCAATTTTAGTCTTAAAGTAAATGGAGGACATACAATTGCTGTAGTGGGGGTGTCGGGGTCAGGGAAGAGCACAATAATATCTTTGATTGAGAGATTCTATGATCCAGTTGCTGGCCAAGTTTTGCTAGATGGGAGGGATTTGAAACTATATAATTTGAGATGGTTGAGGAGCCACCTTGGTCTGGAACCAATTATCTTCTCAACGACCATAAGGGAAAACATCATATATGCCAGGCATAACGCCAGTGAAGCTGAAATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGTAGCTTGCCTCATGGTTATGACACTCATGTGGGGATGAGAGGTGTTGACTTAACTCCAGGACAAAAACAGAGAATTGCAATCGCAAGGGTAGTGCTTAAAAATGCTCCTATTTTGTTGTTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAATAATGGGAAACAGGACCACTATTTTAATAGCACACAGAGCTGCAATGATGAGGCATGTGGACAACATAGTAGTTCTTAATGGAGGACGGATAGTGGAGGAGGGGACCCATGATACATTGAATGGGAGTATCAATGTTATGTGGAGGCTTGGATGTAGCAAGAAAGGGAGTATTGGTAGGCATAGGGAAGAGTGTACTGTAGCAGGGATAGTGTAG 4209 0.4224 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDLGAETSASQPMEVEEEMEEADEIEPPPAAVPFSRLFACSDRLDWFLMLVGSLAAAAHGTALVVYLHYFAKVLRVPQQGSAEEQFHRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQQAVSYIRTLYAFTNETLANYSYATSLLATLRYGILISLAQELGLGFTYGLAICSCALQLWVGRLLVIHEKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSPSSFNHDGSAPASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETATFQIEKDSSESHSFKEPSSPKMRKSPSLQRVSAVFRPDGFFNSQESPKVRSPPSEKMIENGQSLDSADKEPSIKRQDSFEMRLPELPKIDVQCVHRQASNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSHSDDLSVKMSETKDARHRKQPSIWRLAELSFAEWLYAVLGSTGAAIFGSFNPLLAYVIGLVVTDYYKIDDAHHLRREIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAIIVAFLIGVLLHWRLALVALATLPVLCVSAVAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYQLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTAICVKKSYVDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLMSVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGHTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNRTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDTLNGSINVMWRLGCSKKGSIGRHREECTVAGIV 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02824 1402 Gene3D - 1140 1386 IPR027417 -
Cca02g02824 1402 Gene3D - 394 647 IPR027417 -
Cca02g02824 1402 MobiDBLite consensus disorder prediction 659 729 - -
Cca02g02824 1402 Gene3D ABC transporter type 1, transmembrane domain 796 1139 IPR036640 GO:0005524|GO:0016021
Cca02g02824 1402 SUPERFAMILY ABC transporter transmembrane region 814 1135 IPR036640 GO:0005524|GO:0016021
Cca02g02824 1402 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1374 - -
Cca02g02824 1402 SMART AAA_5 1177 1361 IPR003593 -
Cca02g02824 1402 SMART AAA_5 431 610 IPR003593 -
Cca02g02824 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1150 1384 IPR003439 GO:0005524
Cca02g02824 1402 MobiDBLite consensus disorder prediction 779 803 - -
Cca02g02824 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 827 1119 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02824 1402 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 379 - -
Cca02g02824 1402 Pfam ABC transporter 1168 1313 IPR003439 GO:0005524
Cca02g02824 1402 SUPERFAMILY ABC transporter transmembrane region 70 385 IPR036640 GO:0005524|GO:0016021
Cca02g02824 1402 Coils Coil 249 269 - -
Cca02g02824 1402 PANTHER ABC TRANSPORTER B FAMILY 19 1374 - -
Cca02g02824 1402 MobiDBLite consensus disorder prediction 19 46 - -
Cca02g02824 1402 Gene3D ABC transporter type 1, transmembrane domain 61 385 IPR036640 GO:0005524|GO:0016021
Cca02g02824 1402 MobiDBLite consensus disorder prediction 755 778 - -
Cca02g02824 1402 MobiDBLite consensus disorder prediction 702 725 - -
Cca02g02824 1402 MobiDBLite consensus disorder prediction 755 803 - -
Cca02g02824 1402 Pfam ABC transporter transmembrane region 84 354 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02824 1402 Pfam ABC transporter transmembrane region 835 1095 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g02824 1402 MobiDBLite consensus disorder prediction 659 677 - -
Cca02g02824 1402 CDD ABC_6TM_Pgp_ABCB1_D2_like 822 1133 - -
Cca02g02824 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 404 639 IPR003439 GO:0005524
Cca02g02824 1402 Pfam ABC transporter 425 569 IPR003439 GO:0005524
Cca02g02824 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1139 1373 IPR027417 -
Cca02g02824 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 638 IPR027417 -
Cca02g02824 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 371 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02824 Cca-Chr2 49619796 49630238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02824 59 688 Calmodulin-binding Proteins AT2G36910 43.614 9.31e-161 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02824 K05658 - gmx:100819266 2543.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02824 02 49619796 49630238 Cca02g02824 02 49619796 49630238 ECH