Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02821 ATGGCAGTGTATAGAATTGCCATTGGGTCGCCTAGAGAGGCTAGCAATCCTGCTGCAATTAGAGCAGCATTTGCAGAGTTCTTCTCTATGCTCATTTTTGTTTTTGCAGGCCAAGGCTCTGGCATGGCATACAGCAAACTTACCGGCAATGGACCTGCAACTCCTTCTGGTCTCATAGTTGCATCATTGTCTCATGCATTTGGGCTTTTTGTGGCGGTTTCTGTGGGAGCAAACATTTCTGGTGGTCATGTCAACCCTGCAGTCACATTTGGTGCTTTCATAGGAGGAAACATAACCCTCTTGAGAAGCATTTTGTATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTAAACTTTGCTACTGGTGGAATGGAAATAACAGCTTTCTCTGTTTCCTCTGGTGTGTCAGTGTGGAATGCACTAGTTTTTGAGATTGTGATGACTTTTGGATTGGTGTACACAGTTTATGCCACAGCAGTGGACCCAAAGAAGGGGAATGTGGGTGTTATTGCTCCAATAGCAATTGGTTCCATTGTGGGTGCCAACATCTTGGTGGGTGGGGCTTTTGATGGTGCATCCATGAATCCAGCTGTGTCCTTTGGGCCTGCTATGGTTAGCTGGTCATGGACTCATCACTGGATCTATTGGCTCGGCCCATTCATTGGTTCAGCCACTGCTGCCATTCTCTATGATAATATCTTTATTGGTGATGATGGTCATGAACCCCTTTCAAGTAGTGACTTCTAG 759 0.4545 MAVYRIAIGSPREASNPAAIRAAFAEFFSMLIFVFAGQGSGMAYSKLTGNGPATPSGLIVASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLNFATGGMEITAFSVSSGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNVGVIAPIAIGSIVGANILVGGAFDGASMNPAVSFGPAMVSWSWTHHWIYWLGPFIGSATAAILYDNIFIGDDGHEPLSSSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02821 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cca02g02821 252 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Cca02g02821 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Cca02g02821 252 PANTHER AQUAPORIN TIP1-1 1 251 - -
Cca02g02821 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g02821 252 PANTHER AQUAPORIN-8 1 251 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02821 Cca-Chr2 49610777 49612484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02821 1 252 Major Intrinsic Protein MIP AT4G01470 81.746 5.76e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02821 K09873 - gmx:100818197 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02821 02 49610777 49612484 Cca02g02821 02 49610777 49612484 ECH