Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02819 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCCGAATTAAACCAAAGCAACCCTAGCGCCGCCGAAGCCCCTTCATCTTCCAACTCTCTCAAAACTCTTCTGGACGCTGCCACCCCCGCACCCAGATTGTCCAAGAGAGAGAAACGCCGAAAGCTTCGATCTTCGCAAAACCCTAACCCTCCGCAAGAGCCCAATGACGAAACTCACAAAGAGGGTTCAACCAACAAAaagaaaaagaggaagaaggtagaggacgatgacgtggcaaatgaagTTCCCAACAAGTCACCGAGCaataacaagaagaagaaacagaagcagaagaacaagaacaagaagaagaataagaaATCCAGAACGGCGGAACAAAACGGTTCCAATGGTGAAGGGGAAGTGCCATTGCCAGAGGCTACAGAGTTAACCAACACCAATGCAACCGCCAGTCAAGACAATGGTGATGTTCCTATCAGTACAAAGGTTTATGTTGGAGGAATTCCCTATTATTCGACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAATTGATTGCATGACTTTTCCTGAAACTGGCAAGTTCAGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAGAATTCAACCTTATAAAGCAACTCGAGCCAGTAAAACATCAAATTTTGCTCCAGAAATGTTGGAGGGGTACAACAGAATATATGTTGGGAATTTGTCGTGGGATATAACAGAGGAAGAACTGAGGAAGTTCTTCAAAAATTGTGACATAGCATCCCTACGATTTGGTATGGACAAGGAGACAGGAGAATTTCGAGGGTATGCCCACTTGGACTTCAGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCAGTTCCTTTGAAGAAAAAGCCAGGAACTAATACAAGCTCTGTGTCCACCATTAATGGTACTGTTAATGGAGTTGATGGTACTGTTAAAGGAGTTGATGGTGACAAATCaggttccaccgtaagtggcaagatgaagaggaggacgtgttatgagtgtggtgagaaaggacatggtttctctgaatgcccaaagaaaCAAACAGTTGCTGCAACTGCAACTTAA 1212 0.3713 MVLSNKKLKLKLRAELNQSNPSAAEAPSSSNSLKTLLDAATPAPRLSKREKRRKLRSSQNPNPPQEPNDETHKEGSTNKKKKRKKVEDDDVANEVPNKSPSNNKKKKQKQKNKNKKKNKKSRTAEQNGSNGEGEVPLPEATELTNTNATASQDNGDVPISTKVYVGGIPYYSTEDDIRSYFESCGTITEIDCMTFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLRIQPYKATRASKTSNFAPEMLEGYNRIYVGNLSWDITEEELRKFFKNCDIASLRFGMDKETGEFRGYAHLDFSDSQSLKTALTLDQNVLFGRPVRISCAVPLKKKPGTNTSSVSTINGTVNGVDGTVKGVDGDKSGSTVSGKMKRRTCYECGEKGHGFSECPKKQTVAATAT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02819 403 Gene3D - 94 247 IPR012677 -
Cca02g02819 403 MobiDBLite consensus disorder prediction 16 138 - -
Cca02g02819 403 MobiDBLite consensus disorder prediction 16 37 - -
Cca02g02819 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 229 IPR000504 GO:0003723
Cca02g02819 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 325 IPR000504 GO:0003723
Cca02g02819 403 Gene3D - 248 340 IPR012677 -
Cca02g02819 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Cca02g02819 403 SMART rrm1_1 162 234 IPR000504 GO:0003723
Cca02g02819 403 SMART rrm1_1 257 328 IPR000504 GO:0003723
Cca02g02819 403 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 55 399 - -
Cca02g02819 403 CDD RRM2_PHIP1 257 328 IPR034362 -
Cca02g02819 403 SUPERFAMILY Retrovirus zinc finger-like domains 370 397 IPR036875 GO:0003676|GO:0008270
Cca02g02819 403 MobiDBLite consensus disorder prediction 102 120 - -
Cca02g02819 403 Gene3D - 356 401 - -
Cca02g02819 403 ProSiteProfiles Zinc finger CCHC-type profile. 379 394 IPR001878 GO:0003676|GO:0008270
Cca02g02819 403 SUPERFAMILY RNA-binding domain, RBD 249 344 IPR035979 GO:0003676
Cca02g02819 403 Coils Coil 106 127 - -
Cca02g02819 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 332 IPR000504 GO:0003723
Cca02g02819 403 CDD RRM1_PHIP1 163 234 IPR034361 -
Cca02g02819 403 SUPERFAMILY RNA-binding domain, RBD 152 242 IPR035979 GO:0003676
Cca02g02819 403 MobiDBLite consensus disorder prediction 67 94 - -
Cca02g02819 403 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 55 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02819 Cca-Chr2 49605831 49607866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02819 161 330 Eukaryotic Initiation Factors Gene Family AT2G36660 26.111 1.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02819 - - gmx:100814693 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02819 02 49605831 49607866 Cca02g02819 02 49605831 49607866 ECH