Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02808 ATGAATTGTCTTTTGGCGTGTCAGTCTCAATTGTGGGTAGTGACCATTGTTTTCTACACATGCTTCTTGATCCCATTGATGGAACTCAAGAGGGCACTTGTGAGAGTGTTTGGGTTCATGATGTTTTTCTCTTGTGAGACCAAAGGTGTGGCCAAGGAGATGGAGTTCTTGGAAATTCCATCACTACCCGTGGCAAGGTACGAGGATTTGAGGTGTGAGGGAGGTGAAGATGAGATTTGCTCCATTTGCTTGGTGGAGTATGAGGGAGAAGATGCAGTCACCAAGTTGGGAAGATGTGGACACCTCTTCCATCTCAATTGCATTCACCAATGGACACTGCGCAATCAATTCTCTTGCCCACTTTGTAGGTCCTTTTTGTTTTCTCAACATCATCTTCATACCCACAATTAG 411 0.4477 MNCLLACQSQLWVVTIVFYTCFLIPLMELKRALVRVFGFMMFFSCETKGVAKEMEFLEIPSLPVARYEDLRCEGGEDEICSICLVEYEGEDAVTKLGRCGHLFHLNCIHQWTLRNQFSCPLCRSFLFSQHHLHTHN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02808 136 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 127 - -
Cca02g02808 136 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 127 - -
Cca02g02808 136 ProSiteProfiles Zinc finger RING-type profile. 80 123 IPR001841 -
Cca02g02808 136 SMART ring_2 80 122 IPR001841 -
Cca02g02808 136 Pfam Ring finger domain 80 123 IPR001841 -
Cca02g02808 136 SUPERFAMILY RING/U-box 61 129 - -
Cca02g02808 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 127 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02808 Cca-Chr2 49489762 49490259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02808 1 129 C3H Transcription Factor Family AT4G38140 40.310 3.21e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02808 - - pvu:PHAVU_007G012000g 190.66