Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02800 ATGGCATCGCAATCGAGGAAGAGAGTTGACGCTGTCGATGCTCGATCTGCTTCCGTTCTCGTTCGCGCCAAAGATGGCAGCGCTTTCGCTCGATGTGACGAATGCAAGAAGAATGTGCCGGTGGCACTCATCAACATGCACAATTGCAGCCTGGAAGCTAAAATTAAAATGAACCTAGATGCTCAGGTTGTTGAACAGACTGCTGAAGCTAAGAAGCCTGAGAGGAAGAAGCCCAAATCTAATGAGCCAAAGGCAAAAAAGGCCAAAGTTGAGAAGGGGAAGAAGGTCAAGGATCCAAACATGCCTAAGCGTCCTCCCACCGCCTTCTTTGCCTTTTTGGATGATTTTAGAAAATCTTTCAAGGAAGCTAACCCTGATTCAAAGGATGTTAAGCGGGTTGGTAAAGAGGCTGGTGAGAAGTGGAAGTCTATGACTGATGAAGAGAAGAAGCCTTATTTAGATAAAGTTGCCGAACTCAAGGCAGAGTATGAGAAGGCTATGGAAAGCTATAGAGCTGGGGAAAATGAAGAGGATCAAGCTGGGTCTGATAAGGAAACCACTGCTAAAGAAGTGGAAGAGGAGTTAACAGATGAGGAGTAA 600 0.4583 MASQSRKRVDAVDARSASVLVRAKDGSAFARCDECKKNVPVALINMHNCSLEAKIKMNLDAQVVEQTAEAKKPERKKPKSNEPKAKKAKVEKGKKVKDPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVAELKAEYEKAMESYRAGENEEDQAGSDKETTAKEVEEELTDEE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02800 199 SMART hmgende2 101 172 IPR009071 -
Cca02g02800 199 Gene3D High mobility group box domain 97 173 IPR036910 -
Cca02g02800 199 MobiDBLite consensus disorder prediction 66 106 - -
Cca02g02800 199 MobiDBLite consensus disorder prediction 122 152 - -
Cca02g02800 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 193 - -
Cca02g02800 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Cca02g02800 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Cca02g02800 199 MobiDBLite consensus disorder prediction 67 101 - -
Cca02g02800 199 CDD HMGB-UBF_HMG-box 102 168 - -
Cca02g02800 199 Coils Coil 156 176 - -
Cca02g02800 199 MobiDBLite consensus disorder prediction 167 191 - -
Cca02g02800 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 193 - -
Cca02g02800 199 MobiDBLite consensus disorder prediction 167 199 - -
Cca02g02800 199 SUPERFAMILY HMG-box 93 178 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02800 Cca-Chr2 49441133 49443067 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca02g02800 HMG_box 8.5e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02800 K25507 - gmx:100810345 333.183