Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02799 ATGGATAATTGTATATATATTACTTCATCAGATGATGACTTGGAGGAGATAGAAGATCCAAGGAGGACCCTTCCGCAATGGGCTACTTTGGCTGAACGGAGTTCTGATAGTGGTGGATGGTCTAGGGGGGATAGTTCTTTAAGAGGGGCAAATAGTTTAAACCCAAGCTCTTCTAATGTTTTTAATCATTCACAAGTCAAGCCTCGTACCCAGCCTGTGTCCGGCACCAATACACTGAACCACATTGCAAGAAGAGATGAACCTTCATACCATGCCCAGAATGGAAACACAAGTCAGCATCAAACAGTTAATTCCCGAATTTCAAATAATCATAATGCTGATTATGAGAGAATGTCATCTCAGCAAGCTCTCAAGAGGACCCTTCCGTCATCTCTTCAACCATCTGCAACAAGGGCTCTTCCTTCTTCGACATTTGCATCAGGAAGCAGATTAAGCAATTTAAATAACGGGAGCAGCAGTCAACTTCAGGATGCATATAAGAATCGTCGCCATGGAGTAGGACCTAGCACATCTAGTGACAAGGGCTACTTTCGTGAAAATTTTAGCAGGGGCAATGATGAAGATCGTTTCTTTTATCAAAATGTTGGGATTAGGAATCTTCCTTCATCTATGATGCTTGGAAAGGGGATAACTCCACAGTTTGCTAGTTCTAGTGAATCTGCATATCGTCCTGGAGCAGGTGATGAAAGGGCTTCTGGAAATGATGAGAGACTAATTTATGAGGCAGCATTGCAGGATATCAGTCAACCAAAAACAGAATCTGATTTACCTGCTGGTGTATTGTCTGTCTCTCTTTTTAGACATCAGAAAATTGCATTGGCTTGGATGCTTCTGAAGGAAACCAGGAGTTTGCATTGCTTGGGGGGCATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTTCCCTCATCCTAGCACAGAGGTCATTACAGTCAAAATCAAAAGCAAATGATACACTCGATCATAAAACTGAAGCTTTGAATTTGGATGATGACGATGACGATTGTAATGTTGATGTGGAGAAGGATAAAAAGAGTGAAGAATCTGATGATATAAAATCTATTAGTGAACCAAGCAGTTCAATACTGGCACCTAGTAGAAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTGTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTAATTTATCATGGGGGGAGTCGGACAAAGGATCCTGTTGAACTTGCAAAATTTGATGTGGTTATCACAACATACTCTATTGTGACTAATGAAGTTCCCAAACAACCCTTGGTTGAGGAGGATGATATTGATGAAAAAACTGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCCGTTAGTAAAAAGAGGAAAAAGCCATTTAATGGAAATAAGAAGGGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTATTGAATGTGGTTCTGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCAGGAACGCCTATTCAAAATAGTATTGATGATTTGTATAGCTACTTTAGGTTCCTAAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTTCCAATATCCAAAAATGCTATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCACTTTGCCTCCTAAAACAACTCGGCTCAGTAAGGTGGATTTCTCCTTTGAAGAGCGAGCCTTCTACACCAAGTTGGAATCAGACTCACGTCTTCAATTTAAGGCATATGCTGCTGCTGGGACAGTAAACCAAAACTATGCTAATATTCTCTTAATGCTTTTACGTCTACGACAGGCTTGTGATCACCCACTTCTTGTAAAAGATTTTAATTCTGATCCTGTTGGGAAAACTTCTGTTGAAATGGCAAAAAATCTCCCAAGGGATATGCAGATTAATCTGTTTAATTGTTTGGAAACGACTTTTGCTTTATGTCAAGTTTGCAATGACCCCCCTGACGACCCTGTTATTACAATGTGTGGTCATGTCTACTGTTATCAATGTGTATCAGAATATTTGGCTGGTGATGATAATACATGCCCTGCAGTTGGTTGCAAAGAACTAATTGGTGAAGATGTTGTTTTCTCCAAAACTACTTTGAGGAGTTGCATCTGTGATGATGGTGATAGTAATAGTTCTGCAGATTCAATACTTTGTGATTATTCACTGGTGCAGCAGAGTGACTATACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGGAGTCAAATTGTAAATTGATGGGTTCTAGTTCTGACTTACCAAACTCTTCTGTGGGTTATAGAGATTCACTGTCTGCTGATAATTTATATGTTGAAGACTGTGATCCAGACATTGGAGTTACAAAACACACAAGAAAGTATTCTGAGTCCACAACTGAAGGACCAATAAAGGCTATAGTTTTTTCTCAGTGGACTAGCATGCTGGACTTAGTTGAGATATCACTGAGACAATCTGATATACTGTACAGGAGACTTGATGGTAGGATGACTCTTGGTGCAAGGGACAAAGCTGTTAAGGATTTTAATACCGAGCCTGAGGTAACTGTTATGCTAATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACCACTGAAGATCAAGCTATTGATCGAGCTCATAGGATTGGACAAACTCGTCCTGTTACTGTGACACGGATCACTATAAAAGATACGGTTGAAGACAGGATACTGGCACTTCAGGAAGAAAAGAGAAAAATGGTTGCATCCGCTTTTGGGGAAGACCATGCTGGTGCTTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTTTTCATGGTCTAG 3069 0.4008 MDNCIYITSSDDDLEEIEDPRRTLPQWATLAERSSDSGGWSRGDSSLRGANSLNPSSSNVFNHSQVKPRTQPVSGTNTLNHIARRDEPSYHAQNGNTSQHQTVNSRISNNHNADYERMSSQQALKRTLPSSLQPSATRALPSSTFASGSRLSNLNNGSSSQLQDAYKNRRHGVGPSTSSDKGYFRENFSRGNDEDRFFYQNVGIRNLPSSMMLGKGITPQFASSSESAYRPGAGDERASGNDERLIYEAALQDISQPKTESDLPAGVLSVSLFRHQKIALAWMLLKETRSLHCLGGILADDQGLGKTISMISLILAQRSLQSKSKANDTLDHKTEALNLDDDDDDCNVDVEKDKKSEESDDIKSISEPSSSILAPSRKRPAAGTLVVCPASVVRQWARELDEKVGDEKLSVLIYHGGSRTKDPVELAKFDVVITTYSIVTNEVPKQPLVEEDDIDEKTGERFGLSSEFSVSKKRKKPFNGNKKGKKGRKGIDSSIECGSGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNAIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTTRLSKVDFSFEERAFYTKLESDSRLQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDFNSDPVGKTSVEMAKNLPRDMQINLFNCLETTFALCQVCNDPPDDPVITMCGHVYCYQCVSEYLAGDDNTCPAVGCKELIGEDVVFSKTTLRSCICDDGDSNSSADSILCDYSLVQQSDYTSSKIKAVLEVLESNCKLMGSSSDLPNSSVGYRDSLSADNLYVEDCDPDIGVTKHTRKYSESTTEGPIKAIVFSQWTSMLDLVEISLRQSDILYRRLDGRMTLGARDKAVKDFNTEPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGASGTRLTVDDLKYLFMV 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02799 1022 Pfam SNF2-related domain 292 677 IPR000330 GO:0005524|GO:0140658
Cca02g02799 1022 SUPERFAMILY RING/U-box 714 771 - -
Cca02g02799 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 1021 IPR027417 -
Cca02g02799 1022 Gene3D - 365 455 IPR038718 -
Cca02g02799 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 600 IPR027417 -
Cca02g02799 1022 Pfam Zinc finger, C3HC4 type (RING finger) 715 758 - -
Cca02g02799 1022 ProSitePatterns Zinc finger RING-type signature. 731 740 IPR017907 -
Cca02g02799 1022 ProSiteProfiles Zinc finger RING-type profile. 716 752 IPR001841 -
Cca02g02799 1022 MobiDBLite consensus disorder prediction 115 186 - -
Cca02g02799 1022 Gene3D - 615 1021 IPR027417 -
Cca02g02799 1022 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 83 1021 - -
Cca02g02799 1022 MobiDBLite consensus disorder prediction 348 364 - -
Cca02g02799 1022 SMART ultradead3 268 579 IPR014001 -
Cca02g02799 1022 MobiDBLite consensus disorder prediction 28 76 - -
Cca02g02799 1022 Pfam Helicase conserved C-terminal domain 867 964 IPR001650 -
Cca02g02799 1022 SMART helicmild6 881 964 IPR001650 -
Cca02g02799 1022 CDD SF2_C_SNF 865 973 - -
Cca02g02799 1022 MobiDBLite consensus disorder prediction 16 76 - -
Cca02g02799 1022 MobiDBLite consensus disorder prediction 115 185 - -
Cca02g02799 1022 CDD DEXDc_SHPRH-like 272 600 - -
Cca02g02799 1022 SMART ring_2 716 754 IPR001841 -
Cca02g02799 1022 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 83 1021 - -
Cca02g02799 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 766 IPR013083 -
Cca02g02799 1022 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 562 IPR014001 -
Cca02g02799 1022 Gene3D - 246 331 IPR038718 -
Cca02g02799 1022 Gene3D - 490 613 IPR038718 -
Cca02g02799 1022 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 851 1017 IPR001650 -
Cca02g02799 1022 MobiDBLite consensus disorder prediction 337 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02799 Cca-Chr2 49409501 49420838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02799 1 922 RAD5 or RAD16-like Gene Family AT1G50410 53.895 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca02g02799 SNF2_N 2.9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02799 - - gmx:100795142 1677.14