Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02786 ATGTCGGAAGCACCGTCTCAGCCACCGCCTCCAACCGCCGAAGCGCCGCCGCAGCCATACTGGTGCTACCACTGCGAGAAGCGCGTCTCCGTCGAAACGCTCGCCAATCTCCCCGACGTCGTCTGCGGCGAGTGCAAGAACGGCTTCGTCGAATCCATCCCAACGCCCTCTCGCTCTCGCTCCCCTTCCTCCTCCTCCGAGGACCCCTACCTCGGCTCCCAGTTCCTCCAGGTCCTTCGCCTAATCGCGCAATCCGCGCGTGACGACGACGCCTCGCCTCCGCCGCCGCCCACGCGCTCTCCGGAGACCGATTTCCTCAGGATCGAGCTCGGCGGCTGGgacaacgacgacgaaaacgacaacgacaacgacgacgacgacgacaacgacGACGCCGGCGCCGAGTTCGAGGAGCACGAGGAGTCGGAGGAGCGCTCCGGCAACGACGATCCGCACGGAGACGACGAGGATCTGAGGCGGAGGAGGCGCGAGCTGCTTCGCCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGCAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTGGAGGACAATTCCATCGAGTTCCGCCTCCAGGTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCTGCGGAGTACGAGGCGCTGCTGCAGACACTGGCGGAGAGCGACGGCGGAGGGAGGAGAGGAGCGCCGCCGGCGTCGAAGTCGGCGGTGGAGGCGTTGCCGACGGTGAAGATTGAAAGTGAAGGCGTGGTGTGCGCTGTGTGCAAGGATTTGCTCGGCGTTGGAGACGCGGCGAAGAGATTACCGTGCGGGCATGAGTATCACGGAGATTGCATTGTTCCTTGGTTGAGTTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTACCAACGGATGATAGGGAGTACGAGGAAGAGAGAGTGGTTAACTCTGCTTCTTCCAATTCTAACGGAGCTTCGAGTTCGggtggtggtggtggtggtggtggtggtggAACTCACATTGTTTGA 1050 0.5733 MSEAPSQPPPPTAEAPPQPYWCYHCEKRVSVETLANLPDVVCGECKNGFVESIPTPSRSRSPSSSSEDPYLGSQFLQVLRLIAQSARDDDASPPPPPTRSPETDFLRIELGGWDNDDENDNDNDDDDDNDDAGAEFEEHEESEERSGNDDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQVPESDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPASKSAVEALPTVKIESEGVVCAVCKDLLGVGDAAKRLPCGHEYHGDCIVPWLSSRNSCPVCRFELPTDDREYEEERVVNSASSNSNGASSSGGGGGGGGGGTHIV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02786 349 MobiDBLite consensus disorder prediction 322 336 - -
Cca02g02786 349 MobiDBLite consensus disorder prediction 115 138 - -
Cca02g02786 349 MobiDBLite consensus disorder prediction 139 157 - -
Cca02g02786 349 Pfam zinc-ribbon 18 53 IPR039525 GO:0061630
Cca02g02786 349 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
Cca02g02786 349 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 34 338 - -
Cca02g02786 349 SUPERFAMILY RING/U-box 259 312 - -
Cca02g02786 349 MobiDBLite consensus disorder prediction 111 157 - -
Cca02g02786 349 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 34 338 - -
Cca02g02786 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 312 IPR013083 -
Cca02g02786 349 Pfam Ring finger domain 265 306 IPR001841 -
Cca02g02786 349 SMART ring_2 265 305 IPR001841 -
Cca02g02786 349 MobiDBLite consensus disorder prediction 319 349 - -
Cca02g02786 349 MobiDBLite consensus disorder prediction 52 72 - -
Cca02g02786 349 MobiDBLite consensus disorder prediction 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02786 Cca-Chr2 49327207 49330194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02786 102 318 C3H Transcription Factor Family AT5G01980 39.367 1.06e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02786 - - gmx:100780991 494.967