Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02770 ATGATGTCTTCCGGCGCCGGCGGCGGAGCAAAGCCGTTCTTCTGTCACGTGTGCAGCCAGAGGGTCACGTGTGCCGATGACTCGGAACCGTTCTGCCCGATCTGTCTCGAGGGTTTCGTCGAGGAATGGaaccctaatcctaaccctaacgcaaaccctaaccAAGAGTCTGACGACTCTTCGGATTCCGAATTTCCCTTCCACCCTTTCCCCCTCCTTCCTCTCTTGTTATCCTCCGCTTCGAGGATCCGACCCGAACCCGACATGTTCGACCCGTTGATCTTCCTCCAGAACCACCTTCAGGAACTCCGCGCCGGCGGCGCCAACGTCCAATTCGAATTCGGCCACGGCCACTCCTCGGGCAACGTCGGCGACTACTTCCTTGGCCCCGGCTTCGAGCAGTTGATGCAGCAGCTCGCCGACAACGACCCCAACCGCTATGGCACGCCGCCTGCCGCCAAGGACGCCGTCGAGAACCTCCCCACCGTCACCGTCGACGACGACTTGCTGAACTCGGAGCTGAACCAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCATGTGACGCAAATGCCCTGCAAGCACGTGTACCACGGTGACTGCTTGATTCCCTGGCTTCGCCTGCACAACTCTTGCCCCGTGTGCCGGTACGAATTGCCCACGGACGACGCCGATTACGAGAATCGGACGCAAGGGAACGCCGGTGATGGGTCGAGGTCCAGTGGGAGAGATAGTGGTGGCAGCGACAATGGCGGTGCAGGTGCAAGGGGGAGTAACAGGCCTGTTCACAGGACTTTTAGAATATATCTGGGGAATCCTTTTGATGCAGGTGGGTCTGCGCACGACAGCGGTGAAAGGAGATGGAGGAATTTTCCAGAAGATATGGATTGA 897 0.5708 MMSSGAGGGAKPFFCHVCSQRVTCADDSEPFCPICLEGFVEEWNPNPNPNANPNQESDDSSDSEFPFHPFPLLPLLLSSASRIRPEPDMFDPLIFLQNHLQELRAGGANVQFEFGHGHSSGNVGDYFLGPGFEQLMQQLADNDPNRYGTPPAAKDAVENLPTVTVDDDLLNSELNQCAVCQDEFEKGSHVTQMPCKHVYHGDCLIPWLRLHNSCPVCRYELPTDDADYENRTQGNAGDGSRSSGRDSGGSDNGGAGARGSNRPVHRTFRIYLGNPFDAGGSAHDSGERRWRNFPEDMD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02770 298 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Cca02g02770 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 224 IPR013083 -
Cca02g02770 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 278 - -
Cca02g02770 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 78 - -
Cca02g02770 298 SMART ring_2 177 217 IPR001841 -
Cca02g02770 298 MobiDBLite consensus disorder prediction 228 249 - -
Cca02g02770 298 SUPERFAMILY RING/U-box 156 224 - -
Cca02g02770 298 CDD RING-H2_RNF126_like 176 218 - -
Cca02g02770 298 PANTHER OS06G0101300 PROTEIN 86 278 - -
Cca02g02770 298 PANTHER OS06G0101300 PROTEIN 8 78 - -
Cca02g02770 298 Pfam Ring finger domain 175 218 IPR001841 -
Cca02g02770 298 MobiDBLite consensus disorder prediction 228 298 - -
Cca02g02770 298 MobiDBLite consensus disorder prediction 282 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02770 Cca-Chr2 49157258 49160109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02770 120 229 C3H Transcription Factor Family AT5G01980 49.091 2.97e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02770 K11982 - gmx:100785289 402.905