Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02765 ATGGAGAACGACACCACCGCCGCCGCCGCTAACAATAACGCCACCGCGAAAGTAGGTTCGGAAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCGAATTTGAATGGCgaggagcacatggcagaagaagtggagacagaagaagaggaagatcgagaagcggaagaaggcgaaggagaagCAACTGGATCTGCGCCCAACGCTCGCCAACCTTCTAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCCCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGGATGAATAATGAAGGAAGTGATTATGGAAGTTGGGAAGGCGGAAGCTatttgcatgatgacggggatgattttgatgatctacaggatggtactgatgtggatgaggatgatgacgaagatgacgataatgaggaagagtacgaggatgaagatgcatttgatgtccatgctcatggtagtgccggagaacatgataatCCCAGCATTGAATTTGATCCAGATGTATTTTCAAGTGATGAGGCATATGCAAGAGCTTTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCGTGAGGTGGAGGACATAGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAATTACTTGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCGAGTGATACTATTGCTTGTTTGCCTTCAGTCAACTACAAGACTGGGAGTGATCAGCATGGAAGCAATGATTCGTGTGTCATTTGCCGAATGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1002 0.3653 MENDTTAAAANNNATAKVGSEGVKSNNHNLEEEHSNLNGEEHMAEEVETEEEEDREAEEGEGEATGSAPNARQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEGGSYLHDDGDDFDDLQDGTDVDEDDDEDDDNEEEYEDEDAFDVHAHGSAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREVEDIEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSSDTIACLPSVNYKTGSDQHGSNDSCVICRMDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02765 333 MobiDBLite consensus disorder prediction 68 84 - -
Cca02g02765 333 MobiDBLite consensus disorder prediction 44 60 - -
Cca02g02765 333 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g02765 333 Pfam Ring finger domain 280 322 IPR001841 -
Cca02g02765 333 MobiDBLite consensus disorder prediction 1 84 - -
Cca02g02765 333 MobiDBLite consensus disorder prediction 26 43 - -
Cca02g02765 333 SMART ring_2 282 322 IPR001841 -
Cca02g02765 333 Coils Coil 20 50 - -
Cca02g02765 333 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 27 331 - -
Cca02g02765 333 MobiDBLite consensus disorder prediction 110 155 - -
Cca02g02765 333 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 27 331 IPR043312 -
Cca02g02765 333 MobiDBLite consensus disorder prediction 128 155 - -
Cca02g02765 333 SUPERFAMILY RING/U-box 273 327 - -
Cca02g02765 333 ProSiteProfiles Zinc finger RING-type profile. 282 323 IPR001841 -
Cca02g02765 333 CDD RING-H2_PA-TM-RING 282 322 - -
Cca02g02765 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 329 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02765 Cca-Chr2 49128779 49133122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02765 57 226 C3H Transcription Factor Family AT3G19910 52.907 5.46e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02765 K19045 - gmx:100306465 480.33