Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02762 ATGTCGTCGGGAAGGAAGAAGCGGCAAGGGACCACGGCAATTCCCGTGGATGCAAACTCTACTCAGCATGAAACACAATCTGTGGATTTTGGTGCTGATTGTGAGGCCAATGAGACCAAAAAAATCAACTGGGTTGTGAAGAATGATGATGGGGCAGGGGGTTCTTCCCCCGTTCAAGAAGGCGCACGTGGCAGAAAGAGTAAAAAGGAGACGGAAAAAAAGGTTTTGGAGGGCAATTTGTCGGAGAAGAATGATGCTGAAGAAGATAATAACGGTGAGAATGGTGTTGGGGTTGGAGGTTCTTCCTCCGTTAAAGAAGGCGTGAAGAAGCGTGGTGGAAAAAGTAAAAaggaggaggaggaggaggaTACGGAGAAAAGAATGTCAGAGGGTAATTTGTTGGAGAAGAAGGATGCTCAAGACAAAAACCACAGTGAAAAGGGTGGGGTTTCTGAGCAGAGGAGCGGTAGAAAAAGAAAGATGGTTAAGAAAGATGATGGCGAGTTTGAAATGCCTGCGGATTCTTCGCGAAGTGACAGGCAGTTTAGGCCTAGGGGCCGTAAAGTCATTAAAGAAGAGGTGGAACCAAAAATCAACAAGTGGGATCCTAAGTGGATTGAAGAGATTTCCTTAATGTGCCATCAGTGTCAGAGGAATGATAAAGGCGATGTTGTGAGGTGCACACTTTGTAAGAGGAAAAGATTTTGCTTTCCTTGTTTAAAAAGTTGGTATCCCCATTTGAAAGAGTATGATATTGCTGAGGCATGTCCTGTATGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCCGATGAACTCATTAAGAAAATGAAGAAAGAAACAGAAACCATTAAAGATGAGAAGGTTGAATTCTCGATACATTTGCTGCAAGTACTTCTTCCATATTTAAGGCTGTTGGAAGAAGAACAGATGATTGAGAATGAGACAGAAGCTAAGATACGGGGGCTCTCAGTCTCAGAGCTAAATATAGTAAAGGCAGATTTCACTATGGGCGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTCGATCTTTGTCTCAGCTGTTGCCGTGAGCTTCGTAGAGGGCAGCTTGTAGGTGGTGCAGATCCAGTTGTGTTGGAGTTTGTCTGGCAAGGTAAGGATTACTTGCATGGTGCTGAAAAAGAAGGTAAAAGGGTAAAACGAAATGCATCAAATGCTGATGCTAAGCCTGTAGTTTGTGAATGGTCAAGATCTGGGTGGCATGCAAAAAGTGACGGTAGCATTCCTTGTCCCAAAATCAATGATTGTAACCATGGTTTTCTTGAACTGAGAAGCATTTTAGGCCAACACTTTATCTCTGAGTTAGTGCGTAAAGCGAATGAACTAGCGCAAGCATACAAGCTTCAAGATGTAGCTATGACCCCTGATGACTTCTGTTCGTGTTTGAGGCTTGACAGAAACTCAGATGATGTATATAGTAATATGAGGAAGGCTGCTTCTCGTGAATATTCCAGTGACAACTATTTATACTGCCCTCGGGCTGTAGATCTACAGTACAAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTTGTTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATGCCGTCAGATGATTAATACCAAGCGTGAACAACATTTGGATGTCAAGGCCATTGATTGCTTAGATTGGTGTGAGGGAGAAATTAATATCCACCAATTTTTCACTGGGTATACAAAAGGTCGTAAGGATTGGCTCAATTGGCCTCAGATATTGAAGTTAAAAGATTGGCCTCCTTCTAATTTATTTGAAGAACGTTTGCCTCGCCACTGTGCTGAGTTCATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCATGTAGGTTCTCTTAACCTTGCTGTGAAGTTGCCTAAAAGTTGTATAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAGGAGCTTGGACGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGGAATTGGAATCAGATCAACTTACTGCCATTGACAGGTTGAAAACAAAGCATTTTAAGCAAGACAAAAGGGAACTACTTGGTGATGATCAGGATGGAGAAACTAATGTTGGCATGCTTAATAATTCATCTTCTACCTTGATTGCTTTGGACAAGCAAAATAGTGATCAAGTCATGGAACATGAAGAGCTCAAAGAGGTTGACAAAGTAAAAATAAAACAAGAACGTGATTTGTTGTTTCCAGGGGATGCTTCAGCAGGTGCCCTCTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTTAGAGAGTTCAGGCATATCCATTGCTGTCCTTTGAAGCAGGTTATTCATCCCATCCATGACCAGACCTTCTATCTGACTATGGAGCATAAAAGGAAGCTTAAACAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAAAAGGTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCATCAAGTCAGAAATCTGAAGTCATGCATTAAGGTTGCATTGGATTTTGTCTCTCCTGAAAATGTTGGGGAGTGCTTTCGATTAACAGAGGAATTTCGTACACTTCCAATAAACCACATGTCTACCGAGGACAAATTGGAGGTGAAAAAGATGACGGTATATGCTATGCAAGATGTGATCGGAAAATTAGAGCAAGCAAGGTCCGGGAAAACCAAGGTCCGGGAAAACCAAGTGCCCACCCCGTCCCACTTTCTCTTTCTTCGCGAACAAAATCCCAATTTGTTCTTCGCGAACCCTAATTCATTCATCCTATTCCAAATCTCAATCTCTTCTTTCGCGTCGCAAATCTTGGTGCAGGATTGA 2994 0.4218 MSSGRKKRQGTTAIPVDANSTQHETQSVDFGADCEANETKKINWVVKNDDGAGGSSPVQEGARGRKSKKETEKKVLEGNLSEKNDAEEDNNGENGVGVGGSSSVKEGVKKRGGKSKKEEEEEDTEKRMSEGNLLEKKDAQDKNHSEKGGVSEQRSGRKRKMVKKDDGEFEMPADSSRSDRQFRPRGRKVIKEEVEPKINKWDPKWIEEISLMCHQCQRNDKGDVVRCTLCKRKRFCFPCLKSWYPHLKEYDIAEACPVCRGNCNCKACLRSDELIKKMKKETETIKDEKVEFSIHLLQVLLPYLRLLEEEQMIENETEAKIRGLSVSELNIVKADFTMGERVYCDNCKTSIFDYHRSCTKCSFDLCLSCCRELRRGQLVGGADPVVLEFVWQGKDYLHGAEKEGKRVKRNASNADAKPVVCEWSRSGWHAKSDGSIPCPKINDCNHGFLELRSILGQHFISELVRKANELAQAYKLQDVAMTPDDFCSCLRLDRNSDDVYSNMRKAASREYSSDNYLYCPRAVDLQYKDLRHFQWHWEKGEPVVVSNVLECTSGLSWEPLVMWRACRQMINTKREQHLDVKAIDCLDWCEGEINIHQFFTGYTKGRKDWLNWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPHVGSLNLAVKLPKSCIKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVELESDQLTAIDRLKTKHFKQDKRELLGDDQDGETNVGMLNNSSSTLIALDKQNSDQVMEHEELKEVDKVKIKQERDLLFPGDASAGALWDIFRRQDVPKLQEYLKKHFREFRHIHCCPLKQVIHPIHDQTFYLTMEHKRKLKQEYGIEPWTFIQKVGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHMSTEDKLEVKKMTVYAMQDVIGKLEQARSGKTKVRENQVPTPSHFLFLREQNPNLFFANPNSFILFQISISSFASQILVQD 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02762 997 SUPERFAMILY Clavaminate synthase-like 520 928 - -
Cca02g02762 997 Gene3D Cupin 515 919 - -
Cca02g02762 997 ProSiteProfiles JmjC domain profile. 650 910 IPR003347 -
Cca02g02762 997 Coils Coil 271 291 - -
Cca02g02762 997 Pfam JmjC domain, hydroxylase 796 893 IPR003347 -
Cca02g02762 997 MobiDBLite consensus disorder prediction 45 183 - -
Cca02g02762 997 MobiDBLite consensus disorder prediction 1 28 - -
Cca02g02762 997 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 210 274 IPR018866 -
Cca02g02762 997 MobiDBLite consensus disorder prediction 62 90 - -
Cca02g02762 997 MobiDBLite consensus disorder prediction 1 32 - -
Cca02g02762 997 PANTHER - 48 937 - -
Cca02g02762 997 MobiDBLite consensus disorder prediction 107 183 - -
Cca02g02762 997 ProSiteProfiles Zinc finger RING-type profile. 213 260 IPR001841 -
Cca02g02762 997 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 48 937 IPR045109 GO:0032454|GO:0033169
Cca02g02762 997 SMART cupin_9 631 910 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02762 Cca-Chr2 49082232 49102675 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca02g02762 JmjC 2.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02762 K15601 - gmx:100805723 1349.34