Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02757 ATGCAATCTATCAGGAAGTCCTTCAAATCTTATGGTTCCCATAACAAACATTCCAAAAGGTTTTCCGCCGCCGGAAACACCGATTCCGACCACGAGCACCTCCCCATCCTCCTCGACCAAGAACCGCACCGCCACAACGCAATGCCCGCCGGCGACTACGTCGTCAAGATCGACGACGCCGCCGACCCCCCTCCCGCCGCCACCTCATCCAACAACCGCATTTGGCGGGACGAGAGCTTCGATTTCCGCAAGAACGAGGACCCTCCGTCGCAGCTCATCGGACGCTTCCTCCACAAGCAGAAGGCCTCCGGCGAGATGCAGCTCGACATGGATTTGGAAATGGAGGAGCTCCAGCACGACGCCGACGAAGGTAAGTTAACGCCGGTGGAAGAATCTCCGGTCACCAACCGCATGTCCAGGGAGCTCAAGGTCTCCTTCGACGAACCCGCTTCCAATGCCATTCAAGAAGATCCCGTCCGGAGAAGACACAGCAAGGAATCCGCCTCCATCTCCATCGCCGAGTTCCAGCGCCCTCCCCACCCGCCCCTGTACGACCGCCGCCGCTCCCCCTCTCCCTCTCCGGCCAACGACTGCGAGGTCCTCCGATGCACCTCCAACGCTTCCTTCGAGAGGAACCTCTCCATGCAGAGGAAATCCGCTTTGTTGAAGGCCAAAACCCGCTCCAGGCTCATTGACCCGCCCGAAGACCAGCCCGACAGGAAATCGGGTCGGGTTCTAAAATCCGGTCAGCTTCTCTCCGGTTTTTTGGGGAAGAAGGGTgacgacgacgacgacgaTCCCTTTCTCGAAGAGGATCTTCCTGATGAGTATAAGAAGACTCATTTTAGCATTTGGACTCTTCTTGAATGGTTGAGTTTGATTTTGATCATTGGTTTGTTGATCACCACTCTTTGTGTCCCCTTTCTCAGGAACAAGGACCTTTGGCAGCTTAGGTTGTGGAAATGGGAGGTTATGGTTCTTGTTCTTATCTGTGGCAGGTTGGTCTCTGATTGGGTTATTAGGATTGCTGTCTTCTGCATTGAGAGGAATTTCCTTTTGCGGAAGAGGGTCTTGTATTTTGTCTACGGTGTGAGGAAGGCTGTTCAGAATTGTGTCTGGTTGGGGCTTGTGTTGATTGCGTGGCATTTGTTGTTTGACAAGAGGGTGCAGAGGGAGACGCACAGTGATTTCCTCGAGTATGTGACTAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTGTGGTTGTTGAAGACTCTTGTGGTGAAGGTGTTGGCCTCTTCTTTCCATGTGAGCACGTATTTTGATCGGATTCAGGAGTCACTGTTCAATCAGTTTGTGATCGAGACGCTTTCGGGGCCTCCGTTGGTGGAGATTCAGAAGGCAGAGGAGGAGGAGGAGAGGCTGGCTGATGAGGTTCAGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGGGCAACTGCTTTTACCAATATTAAGAGTGAAAGGCTGAGGAGTGGAGCGCTGCAGAAGAGCCCCAGAGTTAAGAGTGGCAAGTTTTCGCGGCCTCTTTCCAAGAGGTCAGATGATGGGAATGTGATCACCATTGATAACCTGCATAAGCTGAATCCCAATAATGTCTCCGCCTGGAATATGAAAAGGTTGATTAATATGGTCCGCCATGGGTCTCTTTCTACGTTGGATGAACAGATACTCGATAATGCCAATGATGATGAAAATGCCACGATGATTCGAAGCGAAAACGAGGCAAAAGCTGCAGCTAAGAAGATATTTCAGAATGTTGCTAGGCGCGGATGCAGGTATATATACCCCGAGGATTTGATGCGGTTTATGCGCGAGGATGAAGCTGCGAAAACCATGAATCTCTTTGAAGGAGCTGCCGATGCTGGGAGAATCGGCAAATCGGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCACTTGCTTTGACATTGAATGACACCAAGACGGCAGTGAACAAACTTCATCGAATGCTAAATTTTATAGTTGCAATTGTTATACTGGTTATTTGGCTCTTGATATTGGAATTTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGGTTGTTGTGGTTGCATTTGTATTTGGAAACACCTGTAAGACCATATTTGAAGCAATTATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAGATGATTGTAGAAGAAATGAACATACTGACAACCATATTTCTGAAATGGGATAATCAAAAGGTCATCATCCCTAATAGTGTCCTTGCTACCAAGCCCATATATAACTTTTACCGGAGTCCTGACATGGGAGATACTATCGAATTCTATGTACACATATCTACCCCAGTTGATAAGATTACAGCTATGAAACACAGAATATCAAGTTTCATGGATAACAAGAAGGAGCACTGGTATCCTTCACCGTTATTTGTAATCAGGGATTTTGATCATTTAAACATGATCAAAATGGCTATCTGGCCAATTCAAAAAATGAACTTCCAGGACATGGGAGAAAGGTATGAGAGGAGAGCCCTTGTGCTGGAAGAGATGATCAAGACTTTCAGAGAGCTCGACATGAATTACCGTCTCCAGCCTCTGGACATTAACGTGAGAGGCGTGCCTACCACTTCTGATCGGCTTCCACCTAGTTGGACAACAGTTTCGAATTGA 2715 0.4814 MQSIRKSFKSYGSHNKHSKRFSAAGNTDSDHEHLPILLDQEPHRHNAMPAGDYVVKIDDAADPPPAATSSNNRIWRDESFDFRKNEDPPSQLIGRFLHKQKASGEMQLDMDLEMEELQHDADEGKLTPVEESPVTNRMSRELKVSFDEPASNAIQEDPVRRRHSKESASISIAEFQRPPHPPLYDRRRSPSPSPANDCEVLRCTSNASFERNLSMQRKSALLKAKTRSRLIDPPEDQPDRKSGRVLKSGQLLSGFLGKKGDDDDDDPFLEEDLPDEYKKTHFSIWTLLEWLSLILIIGLLITTLCVPFLRNKDLWQLRLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVRKAVQNCVWLGLVLIAWHLLFDKRVQRETHSDFLEYVTKVLVCFLVGTLVWLLKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIQKAEEEEERLADEVQKLQNAGVTIPPDLRATAFTNIKSERLRSGALQKSPRVKSGKFSRPLSKRSDDGNVITIDNLHKLNPNNVSAWNMKRLINMVRHGSLSTLDEQILDNANDDENATMIRSENEAKAAAKKIFQNVARRGCRYIYPEDLMRFMREDEAAKTMNLFEGAADAGRIGKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVAIVILVIWLLILEFATTKFLLFVSSQVVVVAFVFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLKWDNQKVIIPNSVLATKPIYNFYRSPDMGDTIEFYVHISTPVDKITAMKHRISSFMDNKKEHWYPSPLFVIRDFDHLNMIKMAIWPIQKMNFQDMGERYERRALVLEEMIKTFRELDMNYRLQPLDINVRGVPTTSDRLPPSWTTVSN 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02757 904 Coils Coil 456 479 - -
Cca02g02757 904 MobiDBLite consensus disorder prediction 503 522 - -
Cca02g02757 904 MobiDBLite consensus disorder prediction 224 244 - -
Cca02g02757 904 Pfam Mechanosensitive ion channel 671 871 IPR006685 GO:0016020|GO:0055085
Cca02g02757 904 MobiDBLite consensus disorder prediction 228 243 - -
Cca02g02757 904 MobiDBLite consensus disorder prediction 148 199 - -
Cca02g02757 904 MobiDBLite consensus disorder prediction 1 33 - -
Cca02g02757 904 SUPERFAMILY Sm-like ribonucleoproteins 719 778 IPR010920 -
Cca02g02757 904 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 893 IPR016688 -
Cca02g02757 904 PIRSF Memb_At2g17000 38 904 IPR016688 -
Cca02g02757 904 Gene3D - 729 778 IPR023408 -
Cca02g02757 904 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 893 - -
Cca02g02757 904 MobiDBLite consensus disorder prediction 154 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02757 Cca-Chr2 49039134 49042733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02757 66 901 Mechanosensitive Ion Channel Family AT1G78610 57.526 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02757 K22048 - gmx:102665658 1420.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02757 02 49039134 49042733 Cca02g02757 02 49039134 49042733 ECH