LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g02746	ATGATCCGTCTTCCTCACCCACGTCTCTCTTCCGCTTCAGATCACCAAAATCGCTGTTCCAAGATGGGTGTGGCTCAGAAGATTATCGATACGGAGGAGGGTACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGTCGTGGACAAGTTCTAGAGGTAGATGGCGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTGAAAACTCCTGTTTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCCGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCACAACGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGAGACTAGAGAAATCTGATAATCTTCTTGAGGGTGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCAAATGATCCTACTATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAACACGTTCTTGTGATACTCACAGACATGAGTTCTTATGCCGATGCTCTGCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCGACAATTTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACTCAAATACCAATTCTAACCATGCCCAATGATGATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGACAGATATACATTGACAGGCAGCTGTATAATAGACAGATATACCCACCAATCAATGTCCTCCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGCGAGGGAATGACTAGAAGGGATCATGCTGATGTATCAAACCAGCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTTTACTCCGGATTTTCCCTCGTGAACTTCTTCATCGGATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGGGATGCTGGAAATTGA	1533	0.4318	MIRLPHPRLSSASDHQNRCSKMGVAQKIIDTEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN	510

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca02g02746	510	Hamap	V-type ATP synthase beta chain [atpB].	39	508	IPR022879	-
Cca02g02746	510	TIGRFAM	V-ATPase_V1_B: V-type ATPase, B subunit	41	508	IPR005723	GO:0033180\|GO:0046961\|GO:1902600
Cca02g02746	510	Gene3D	-	50	509	-	-
Cca02g02746	510	CDD	V_A-ATPase_B	113	401	-	-
Cca02g02746	510	CDD	ATP-synt_V_A-type_beta_C	409	503	-	-
Cca02g02746	510	CDD	ATP-synt_V_A-type_beta_N	41	112	-	-
Cca02g02746	510	ProSitePatterns	ATP synthase alpha and beta subunits signature.	390	399	IPR020003	GO:0005524
Cca02g02746	510	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	115	405	IPR027417	-
Cca02g02746	510	Pfam	ATP synthase alpha/beta family, beta-barrel domain	45	111	IPR004100	GO:0046034\|GO:1902600
Cca02g02746	510	PANTHER	V-TYPE PROTON ATPASE SUBUNIT B1-RELATED	24	510	-	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g02746	Cca-Chr2	48938147	48946906	Dispersed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g02746	20	510	Primary Pumps ATPases(2)	AT4G38510	95.927	0.0	959

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g02746	K02147		-	gmx:100814088	956.051

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca02g02746	02	48938147	48946906	Cca02g02746	02	48938147	48946906	ECH

Showing 1 to 1 of 1 entries

Previous1Next