Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02746 ATGATCCGTCTTCCTCACCCACGTCTCTCTTCCGCTTCAGATCACCAAAATCGCTGTTCCAAGATGGGTGTGGCTCAGAAGATTATCGATACGGAGGAGGGTACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGTCGTGGACAAGTTCTAGAGGTAGATGGCGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTGAAAACTCCTGTTTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCCGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCAGCTGGTCTCCCCCACAACGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGAGACTAGAGAAATCTGATAATCTTCTTGAGGGTGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCAAATGATCCTACTATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAACACGTTCTTGTGATACTCACAGACATGAGTTCTTATGCCGATGCTCTGCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCGACAATTTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACTCAAATACCAATTCTAACCATGCCCAATGATGATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGACAGATATACATTGACAGGCAGCTGTATAATAGACAGATATACCCACCAATCAATGTCCTCCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGCGAGGGAATGACTAGAAGGGATCATGCTGATGTATCAAACCAGCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTTTACTCCGGATTTTCCCTCGTGAACTTCTTCATCGGATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGGGATGCTGGAAATTGA 1533 0.4318 MIRLPHPRLSSASDHQNRCSKMGVAQKIIDTEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02746 510 Hamap V-type ATP synthase beta chain [atpB]. 39 508 IPR022879 -
Cca02g02746 510 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 41 508 IPR005723 GO:0033180|GO:0046961|GO:1902600
Cca02g02746 510 Gene3D - 50 509 - -
Cca02g02746 510 CDD V_A-ATPase_B 113 401 - -
Cca02g02746 510 CDD ATP-synt_V_A-type_beta_C 409 503 - -
Cca02g02746 510 CDD ATP-synt_V_A-type_beta_N 41 112 - -
Cca02g02746 510 ProSitePatterns ATP synthase alpha and beta subunits signature. 390 399 IPR020003 GO:0005524
Cca02g02746 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 405 IPR027417 -
Cca02g02746 510 Pfam ATP synthase alpha/beta family, beta-barrel domain 45 111 IPR004100 GO:0046034|GO:1902600
Cca02g02746 510 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 24 510 - -
Cca02g02746 510 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 24 510 IPR022879 -
Cca02g02746 510 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 168 399 IPR000194 GO:0005524
Cca02g02746 510 PIRSF V-ATPsynth_beta/V-ATPase_B 33 510 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02746 Cca-Chr2 48938147 48946906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02746 20 510 Primary Pumps ATPases(2) AT4G38510 95.927 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02746 K02147 - gmx:100814088 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02746 02 48938147 48946906 Cca02g02746 02 48938147 48946906 ECH