Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02742 ATGGCGTTTTGGCACCGAATCAGAAATCCCAACCTCAAAACCCTCTCCATCCAATTCCAAAGATGTTACATTCGCCTTCCCCATGCTTCCACTCCCAAACCCTGCCCTATCAACATTCCTCATCCCTATTCCGTGTTTCATCGCAGACCCTCATCTGTGAGGTTCTTCGCTGCACCCGTTCAGTTTCAGGTAAAGCCCAAGGATGAGGAGGAGGACTCCGATGAGTATCGTTTGAATGACAAAATCAAAGCTACATATATCAGGCTTGTGAGGGATGATGGGCAGCATTCAATACTACCAAAGTTTGAAGCATTGGAACTTGCCAAGGAGCTCAAACTTGATTTAGTTGAGGTTGATAGAAGTGCTAAACCACCTGTCTGTAAAATTATGGACTACCACAAGGAAATGTATAAGCGACAAGAATGGGAAAAGGAGCGTGCTAAAAGCAAGGCTAACATGACACTACGAAAGGATAATAAGGAAGTGCGATTTTCTGCAAAAACTGAAGCAAGAGACCTGAAGGTCAAAGCAGATATGATTAGAAAGCTAGCTGAGAAGGGTTATCGAGTGATGTGCAAGATATCAGCCAAGGAAAACCAGGACTTGACAGAAGTATTTTCTCCTCTTCTTGCTCTGATAGAAGATGTCTGTGTTGTGGAAAGTGGACCACATATGGCAAAAAAAGATGCACATATGCTCGTCAGACACATAAAATTTGGTCTACCTAAAAAAGGTGGGAAAAAAGGGCAAGATGCAACACAGGTCAAGATGGAGACATCAACAGCCAGTTCTAGTGATTCCATTGAAGATAAGAGTCACACAGAATCTGGGTTTGAAACGGAGAAGGTGCCTTCTGATGGTGACAAGTTTTCTAAAAGTTCCTGGCCTGTATTTAACAACAGCGTGAATATGACTGCCTCTCCTGATTATCAAACAAATGCTGCTCCAGAAGAAGCTGTCTTTATGTCAAGAAGCAATGATCCAGTATCTCATCCCGCACCAGAAAATAGGTATAGAAGAGCTGTTCATCATGGTGAGAACCAGGTTCAATCCAATGCCGCTGTGGCAGAGAATAGGTACAAAAGAGTAGAGCCAAGAAGTAGATTCCAACAAACACCAAATAATACAGGTATGAACTACCAAGGTCCAGGAACAAGAGATGCAGTCAGGTCGACGACACACCCGAATTGGAATCGGCCGAGCCATGCACCGGTAAATGTTGATCCCAGAATAGAAAATAACAGGCAAGGTTTTAATCCTGGATCAAGACACCCAATGCCTCCCCATGAGAATTTTTCCAAGCATCCTCCTTTTGCTCCTAATACCCCTAGGCCTGGTTATGGCAATTTTAGTGCTTCAAATGAGGGCATTCCCAGGCATCCTGGTGCTCCAAATACCACAAGACCTTCTAGTTATGGCAATTTTAGTACTCCAAAAGGCCCTGAGACACAAGCTCCGTTTCCAGATTCAACCACTCAAACCCTAACTCTTCCAACTTCGCTCAATAAGATATTCAGCAAAACAACCTCCTCTAAATTACGTTTTGAAAAGCCTCAAGTTAAGAAGGAGAAGCACAGGGCCAATGGTGGTGACAAAACTGTGAAGTCCGAAGAGAGGGGGCATGGTGGGAATTCCAAGCATAAGGATTATGATGATGTTGGTCTCCGTTCCAAGCATTCAAAATCCGGAGAGGATTCTCGTGAATATGAGAGGCAGAGAGAAAGAGGTTCCTCTCGCCACGGTTCGCAGTCCAgagagggagagaaggagagggatcagcacagaaggaagagggacagggacagagatcatgaggacaaggataggaagagagacaaccgtgaccaagaaagggacaggAGGGACCGTGGGAGCGAGACTGAACGGGAACGGCGAAGCAGAAGTAGACCCGAAAGGCATCGGGGTGATGTGGATGACAGGGACTATGGAGATAGGGAAAGAAGCCGGGATAAGGAGTACAAAGACAGAGAAAGGGTGAGGGAATCAAGGGAACAGGATAGAGAAACCAGACGACATAAAGAAAAAAAGGATGAAGCAAAAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCTATAGCACTTTCGGGCCAACCTCTTCTTGGTCAGCCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACATCATCTGTTGCTACTGGACCCACTGGACTTATAGGCCCTTATTCTGGGGGTGCGAGAAGGCTGTATGTAGGCAATCTGCATATCAGTATTGGTGAAGCTGATCTTCGTGGGGTGTTTGAGGCATTTGGTCAGGTTGAGCTAGTCCAACTGCCTCTTGATGAAAGTGGGCAATGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGGACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCTTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGAAGTGGCAGTGCATCAAGCATGGTTGGTTCCCTCGGTAATTCTGTTGTCAACAACGTTGGTCTTAATCTACCAGCATCCGGAACCATACCTGCAACTGCATCTGTGGGTTCTCCACTGGTTTCTCCTGTTGCACCAGTAGCTGGGTTGGCAGGTGGAAGTCTCCAAATTCCTACGGCTACAATTCCATCCATTGATACGATTGGCGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAGAGCTCTAAATTTGGGACGTTGAAGCACATATATGTTGATAAGATGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAACGGGCCTTGCACGGAAGATGGTTTGCTGGAAAGATGATCACTGCAAGCTTCATGGTGCCTCAGTCATATGAGGAGAAATTCCCAGATAGCAGATAA 3252 0.4327 MAFWHRIRNPNLKTLSIQFQRCYIRLPHASTPKPCPINIPHPYSVFHRRPSSVRFFAAPVQFQVKPKDEEEDSDEYRLNDKIKATYIRLVRDDGQHSILPKFEALELAKELKLDLVEVDRSAKPPVCKIMDYHKEMYKRQEWEKERAKSKANMTLRKDNKEVRFSAKTEARDLKVKADMIRKLAEKGYRVMCKISAKENQDLTEVFSPLLALIEDVCVVESGPHMAKKDAHMLVRHIKFGLPKKGGKKGQDATQVKMETSTASSSDSIEDKSHTESGFETEKVPSDGDKFSKSSWPVFNNSVNMTASPDYQTNAAPEEAVFMSRSNDPVSHPAPENRYRRAVHHGENQVQSNAAVAENRYKRVEPRSRFQQTPNNTGMNYQGPGTRDAVRSTTHPNWNRPSHAPVNVDPRIENNRQGFNPGSRHPMPPHENFSKHPPFAPNTPRPGYGNFSASNEGIPRHPGAPNTTRPSSYGNFSTPKGPETQAPFPDSTTQTLTLPTSLNKIFSKTTSSKLRFEKPQVKKEKHRANGGDKTVKSEERGHGGNSKHKDYDDVGLRSKHSKSGEDSREYERQRERGSSRHGSQSREGEKERDQHRRKRDRDRDHEDKDRKRDNRDQERDRRDRGSETERERRSRSRPERHRGDVDDRDYGDRERSRDKEYKDRERVRESREQDRETRRHKEKKDEAKEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTSSVATGPTGLIGPYSGGARRLYVGNLHISIGEADLRGVFEAFGQVELVQLPLDESGQCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGSASSMVGSLGNSVVNNVGLNLPASGTIPATASVGSPLVSPVAPVAGLAGGSLQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAESSKFGTLKHIYVDKMSAGFVYLRFEDTQSAISAQRALHGRWFAGKMITASFMVPQSYEEKFPDSR 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02742 1083 MobiDBLite consensus disorder prediction 268 288 - -
Cca02g02742 1083 Gene3D - 984 1083 IPR012677 -
Cca02g02742 1083 SUPERFAMILY RNA-binding domain, RBD 802 1076 IPR035979 GO:0003676
Cca02g02742 1083 MobiDBLite consensus disorder prediction 369 400 - -
Cca02g02742 1083 CDD RRM1_RBM39_like 699 771 - -
Cca02g02742 1083 SUPERFAMILY RNA-binding domain, RBD 691 789 IPR035979 GO:0003676
Cca02g02742 1083 MobiDBLite consensus disorder prediction 243 291 - -
Cca02g02742 1083 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 708 767 IPR000504 GO:0003723
Cca02g02742 1083 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 804 873 IPR000504 GO:0003723
Cca02g02742 1083 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 989 1072 IPR000504 GO:0003723
Cca02g02742 1083 Gene3D - 797 903 IPR012677 -
Cca02g02742 1083 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 159 238 IPR036788 GO:0006413
Cca02g02742 1083 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 698 775 IPR000504 GO:0003723
Cca02g02742 1083 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 802 879 IPR000504 GO:0003723
Cca02g02742 1083 Gene3D - 638 783 IPR012677 -
Cca02g02742 1083 MobiDBLite consensus disorder prediction 514 697 - -
Cca02g02742 1083 MobiDBLite consensus disorder prediction 253 267 - -
Cca02g02742 1083 Gene3D - 69 146 IPR036787 GO:0003743|GO:0006413
Cca02g02742 1083 MobiDBLite consensus disorder prediction 464 513 - -
Cca02g02742 1083 Gene3D - 155 239 IPR036788 GO:0006413
Cca02g02742 1083 TIGRFAM infC: translation initiation factor IF-3 78 234 IPR001288 GO:0003743|GO:0006413
Cca02g02742 1083 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 76 148 IPR036787 GO:0003743|GO:0006413
Cca02g02742 1083 CDD RRM3_RBM39_like 988 1070 - -
Cca02g02742 1083 Pfam Translation initiation factor IF-3, N-terminal domain 78 145 IPR019814 GO:0003743|GO:0006413
Cca02g02742 1083 TIGRFAM SF-CC1: splicing factor, CC1-like family 570 1081 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cca02g02742 1083 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 893 1007 IPR029123 -
Cca02g02742 1083 SMART rrm1_1 990 1068 IPR000504 GO:0003723
Cca02g02742 1083 SMART rrm1_1 699 771 IPR000504 GO:0003723
Cca02g02742 1083 SMART rrm1_1 803 875 IPR000504 GO:0003723
Cca02g02742 1083 PANTHER CC1-LIKE SPLICING FACTOR 520 1079 - -
Cca02g02742 1083 MobiDBLite consensus disorder prediction 369 698 - -
Cca02g02742 1083 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 520 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02742 Cca-Chr2 48873387 48892708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02742 699 865 Eukaryotic Initiation Factors Gene Family AT4G34110 30.178 1.14e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02742 K13091 - gmx:100795336 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02742 02 48873387 48892708 Cca02g02742 02 48873387 48892708 ECH