Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02737 ATGAACATCATGATGCAAAACTTGGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTACTGTATCTACTGGAAACTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGGTGGCGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGGGACACCACTTTTCCCCACCCCAGAACAAAGCCTTGTGATCTTCTCTCTCAACTTTCCATTTCCATACCCATAGATAATCCTGGGATTCATTCACAGACCCTATTAACAAACCAACCCAATTGGGTGAACTATTCCAACAGTTTGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGTCTGAAGATCATCAAGTAATAGATTTCGTGACAAGCCAATGCATTGCTCTTGTGGAGCAGGAAGCAGTGAACCACTCAATGGGCTTCAACATTGACGTGAACTCAATGAGCAACATGCAATCAAATCCACTTTTAGGCGAAGAAAACGAAGGGAACAACAGGATCAATCACTTCCACCCTTCAGAACACGTCATCACTATGGACCACCGCACTGGTTTATGCAATGCACCACTTAACTTCATGCAGCAGTTCAACTACAACAACAGAATGAAGAGCGACGCGTTTTCTGAAGTAGAATACCAAGGTTCCTTCCTGCATGACAAGCAAACAAACCCAGAAGAGGAGCACGACACGTATCAGAGAAGCCTCATGACAGATTCACAATACGTGGTGGAGCCTTTGGACTCGAAAGATAAGCAAGAGGAGGACAAGGACATGCTGAAACACGTTGTTGGAAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAGGGAAACCAGTCCAAAAACCTTGTGGCTGAGAGGAAGAGAAGGAAGAAACTCAATGACAGGTTATACAATCTTCGTTCTTTGGTTCCAAGAATCTCTAAGCTTGATAGGGCCTCCATTCTCGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTCCAAGATGAGCTTGAGGATAATGCAGACACTGAAAGCAACTGCATCAATAACCATTATGTGGGTGCAGCTGAACTTGGCCCAAACGCTGAACATGGTAAGGCCCAAACTGGGTTTCATGTGTCCAAACAAAAGCAGGATGATGCTACTGTCATTGACAAGCAGACCCAGCAGATGGAGCCTCAAGTGGAAGTGGCTCTGATAGATGGGAACGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAGATTGATGGAGGCTTTGAACACTCTTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACAAGGGCCTCGTGTCAAATGTTTTTAAAGTGGAGAAAAAGGACAGTGAAACAGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAAAGGGCGGAGTCATGAGATGACAGCAACTTCGGAAAATGGTGTTGGAAGGGATCAACATCAACTCCACAACCACCAGATTGGTGCCTACTCGCACCAATTTCATAGTTAA 1677 0.4532 MNIMMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNGGEEHLFPVSSVASCRDTTFPHPRTKPCDLLSQLSISIPIDNPGIHSQTLLTNQPNWVNYSNSLDPNILEETIGTQVLISVPGGLVELFVTKQVSEDHQVIDFVTSQCIALVEQEAVNHSMGFNIDVNSMSNMQSNPLLGEENEGNNRINHFHPSEHVITMDHRTGLCNAPLNFMQQFNYNNRMKSDAFSEVEYQGSFLHDKQTNPEEEHDTYQRSLMTDSQYVVEPLDSKDKQEEDKDMLKHVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEDNADTESNCINNHYVGAAELGPNAEHGKAQTGFHVSKQKQDDATVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVRLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSETVEAEDVRDSLLELTRNRYKGRSHEMTATSENGVGRDQHQLHNHQIGAYSHQFHS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02737 558 Pfam Helix-loop-helix DNA-binding domain 331 374 IPR011598 GO:0046983
Cca02g02737 558 MobiDBLite consensus disorder prediction 294 335 - -
Cca02g02737 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Cca02g02737 558 SMART finulus 330 379 IPR011598 GO:0046983
Cca02g02737 558 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 157 IPR025610 -
Cca02g02737 558 Coils Coil 363 393 - -
Cca02g02737 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 385 IPR036638 GO:0046983
Cca02g02737 558 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 97 528 - -
Cca02g02737 558 Gene3D - 312 389 IPR036638 GO:0046983
Cca02g02737 558 MobiDBLite consensus disorder prediction 250 273 - -
Cca02g02737 558 CDD bHLH_AtAMS_like 327 392 - -
Cca02g02737 558 CDD ACT_UUR-ACR-like 454 517 - -
Cca02g02737 558 ProSiteProfiles ACT domain profile. 453 529 IPR002912 -
Cca02g02737 558 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02737 Cca-Chr2 48806917 48810540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02737 5 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.007 1.98e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g02737 bHLH-MYC_N 2.1e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02737 - - gmx:100798282 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02737 02 48806917 48810540 Cca02g02737 02 48806917 48810540 ECH