Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02733 ATGGAGAGCTTTCATTGGTTCGTGCGGATCTTTGCTGGAAAGTGCACAATGGTTTTGCAAACAAAAGAAACCATCACCGCCACCTTCTCCACGGTCTCCGGATCCGAACCGTCGCCCGCACTGCACCGCCATGTTGTCCACCGTCTCCAGATCCGGACGCGCCCAGGCTCGCGCCGCTTCAGCCCCGTCCTAGCCAGCAACAGCCGCGGCCTGCTCCGAgagggtgggattcgagtgggagtgagagtgggtgtgaaggagaAGATGGAGGAAGCTGTGGAACGAGAGAGAGaccccctAGGGAATGCTATGCTGCCTATCCGTTTCTTCAAGATCATTCTTAAAACTAATCTTCAAAGGATTAAAATACCCAACAAGTTTGCAATGAGATATGGTAGTGGCTTGCCAAATCCAGTGTTTATCAAGCCTCCAGATGGTACTGAATGGAAAGTGTATTGGACAACACAAAATGGTGAGGTTTGGTTGGAAAAAGGTTGGAAACAATTTGTTGAACATTATTCCCTAGATCAAGGACATCTCATTTTCTTTGAATATCAAGGAACTTCCCACATTGATGTACTCATACATGACCAAAGTTCTTTGGAAATAGAATATCCTTATTGTGATGAAAAGGACAACATTGATGATAATAATGATGATGTAATATTGGATGAATGGCCCGATCAGAAATCAAAACATATCACAGGTAATGGTAGAAAAAGGATCATGGATGCAGATAGTAGATGCTTAAAATCTAAGGCTATTCAAAGAGAGAAATTGTTAGAAAAATCTGAAAGTAGCGTTGCTTTAAGGAGTGCCATGGCTTTCCACTCAGAAAATCCCTTCTTCATACGTGAAATGCATCCCTCGTACATTAACAATTATTTTTTGGCCATGCCAAGGAATTTCATAACAGCAGAAGAACTAGAGGAGTATGACAGCATTATTCTGTGGAACTCTGAGGGGAAATCTTGGCATGTCAAGTTCAGTCTCAATCGTTCCTCTGGACAAATTTTTCTTAAAGGCCGATGGAAGAATTTTGTAGAGGATAATGGCCTGAAAGTTGGGAATGTTTGTGTTTTTGAGCAAATGCAGAAACTAGGAATTTCATTTAGAGTTTTTATTTTTCGAAATCCAGAAGAATCAAATCCGGGTCCTTCAATGTTGTCAGATTCTGAATTTGTTGGAGGCCACAATAGCTCAGGGAATCAATTCACCATTCCTATCAAGTCGAATCAGCTTTATAAGAAAATACCAGCGAGTTTCCTCCGACATCATGATATTAATAATATGAATGATGTGACGCTGCGAGTTGGGAAGAGATCGTGGCATGTGAAGGTGGATGATTACTGTAGATTCACCACGGGTTGGTCTGATTTTATTAGTCAATGCAATTTGGAACCTGGAGATTTATGTCACTTCGAGTTGATTGATGAGGACGATTTTGTGTTTCAAGTTAGAGTTACCAAGTGCATCGATTGA 1482 0.4001 MESFHWFVRIFAGKCTMVLQTKETITATFSTVSGSEPSPALHRHVVHRLQIRTRPGSRRFSPVLASNSRGLLREGGIRVGVRVGVKEKMEEAVERERDPLGNAMLPIRFFKIILKTNLQRIKIPNKFAMRYGSGLPNPVFIKPPDGTEWKVYWTTQNGEVWLEKGWKQFVEHYSLDQGHLIFFEYQGTSHIDVLIHDQSSLEIEYPYCDEKDNIDDNNDDVILDEWPDQKSKHITGNGRKRIMDADSRCLKSKAIQREKLLEKSESSVALRSAMAFHSENPFFIREMHPSYINNYFLAMPRNFITAEELEEYDSIILWNSEGKSWHVKFSLNRSSGQIFLKGRWKNFVEDNGLKVGNVCVFEQMQKLGISFRVFIFRNPEESNPGPSMLSDSEFVGGHNSSGNQFTIPIKSNQLYKKIPASFLRHHDINNMNDVTLRVGKRSWHVKVDDYCRFTTGWSDFISQCNLEPGDLCHFELIDEDDFVFQVRVTKCID 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02733 493 ProSiteProfiles B3 DNA-binding domain profile. 106 199 IPR003340 GO:0003677
Cca02g02733 493 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 412 488 - -
Cca02g02733 493 Pfam B3 DNA binding domain 116 190 IPR003340 GO:0003677
Cca02g02733 493 Pfam B3 DNA binding domain 417 487 IPR003340 GO:0003677
Cca02g02733 493 Pfam B3 DNA binding domain 282 377 IPR003340 GO:0003677
Cca02g02733 493 PANTHER B3 DOMAIN-CONTAINING 412 488 - -
Cca02g02733 493 ProSiteProfiles B3 DNA-binding domain profile. 418 490 IPR003340 GO:0003677
Cca02g02733 493 Gene3D - 106 200 IPR015300 -
Cca02g02733 493 SUPERFAMILY DNA-binding pseudobarrel domain 277 379 IPR015300 -
Cca02g02733 493 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 106 378 - -
Cca02g02733 493 SMART B3_2 109 199 IPR003340 GO:0003677
Cca02g02733 493 SMART B3_2 405 490 IPR003340 GO:0003677
Cca02g02733 493 SMART B3_2 283 379 IPR003340 GO:0003677
Cca02g02733 493 SUPERFAMILY DNA-binding pseudobarrel domain 108 206 IPR015300 -
Cca02g02733 493 ProSiteProfiles B3 DNA-binding domain profile. 282 379 IPR003340 GO:0003677
Cca02g02733 493 PANTHER B3 DOMAIN-CONTAINING 106 378 - -
Cca02g02733 493 Gene3D - 392 493 IPR015300 -
Cca02g02733 493 Gene3D - 261 380 IPR015300 -
Cca02g02733 493 SUPERFAMILY DNA-binding pseudobarrel domain 409 492 IPR015300 -
Cca02g02733 493 CDD B3_DNA 108 197 IPR003340 GO:0003677
Cca02g02733 493 CDD B3_DNA 418 490 IPR003340 GO:0003677
Cca02g02733 493 CDD B3_DNA 281 377 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02733 Cca-Chr2 48750843 48772342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02733 105 377 B3 DNA Binding Superfamily AT3G18990 25.000 9.05e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca02g02733 B3 8.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02733 - - ccaj:109795879 603.594