Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02732 ATGATGAAGATTGAAGAGAAAATACCTAACAAGTTTACAAGGAAATATGGAGGTGCCTTGCCAAATCCTGTGTTTATTAAGCCCCCTGATGGCACTGAATGGGAAGTGTATTGGGTAACAAAAAATGGTGAGGTTTGGTTGGAAAAAGGTTGGAAACAATTTGTTGAACATTATTCCCTAGATCAAGGCCATCTCATTTTCTTTGAATATCAAGGAACTTCCCATATTGACGTTCTCATACATGACCAGAGTGCACTAGAAATACGATATCCTTCTTCTGATGAAAAGGACAACCTTGATCACACTGATGAAGAACAAATGAGAGATGAGAAGCCTAGTCAAAGAGCTTCATCATTGAATCGGCCAATTCAAACTAGAGCAAGGGAAGTAGCAAGCAGTTTCATCTCAATCAATCCTTTTTTCACGGTTTTCTTGAAGCCTGCTCATGTGTTAGAAAGCTACCTGGCTGTACCAGATATGAAAGGCATTTTTGAGAAGAAGGAGAAGTATGTGCATGTGAAGTTGCAGCTTGGAGAAAGATCATGGAATGTAAAGTTGCTCCTTAGTCAAAGATTTTCATTTGGAAGACTCTCTGCTGGCTGGTCTTTGTTTGCAAGTGAAAATGAATTGCAACCAGGAGACGTTTGTGTATTTGAACTCATTAGCAGGGATGATCCAGTATTCAAAGTTCATGTTTTCAAAAGGCAAGATTAA 714 0.3894 MMKIEEKIPNKFTRKYGGALPNPVFIKPPDGTEWEVYWVTKNGEVWLEKGWKQFVEHYSLDQGHLIFFEYQGTSHIDVLIHDQSALEIRYPSSDEKDNLDHTDEEQMRDEKPSQRASSLNRPIQTRAREVASSFISINPFFTVFLKPAHVLESYLAVPDMKGIFEKKEKYVHVKLQLGERSWNVKLLLSQRFSFGRLSAGWSLFASENELQPGDVCVFELISRDDPVFKVHVFKRQD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02732 237 SUPERFAMILY DNA-binding pseudobarrel domain 138 235 IPR015300 -
Cca02g02732 237 CDD B3_DNA 139 234 IPR003340 GO:0003677
Cca02g02732 237 Pfam B3 DNA binding domain 145 235 IPR003340 GO:0003677
Cca02g02732 237 Pfam B3 DNA binding domain 8 75 IPR003340 GO:0003677
Cca02g02732 237 Gene3D - 122 237 IPR015300 -
Cca02g02732 237 CDD B3_DNA 8 82 IPR003340 GO:0003677
Cca02g02732 237 ProSiteProfiles B3 DNA-binding domain profile. 1 84 IPR003340 GO:0003677
Cca02g02732 237 SUPERFAMILY DNA-binding pseudobarrel domain 8 91 IPR015300 -
Cca02g02732 237 MobiDBLite consensus disorder prediction 91 122 - -
Cca02g02732 237 Gene3D - 3 85 IPR015300 -
Cca02g02732 237 PANTHER B3 DOMAIN-CONTAINING 124 234 - -
Cca02g02732 237 PANTHER B3 DOMAIN-CONTAINING 6 109 - -
Cca02g02732 237 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 124 234 - -
Cca02g02732 237 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 109 - -
Cca02g02732 237 MobiDBLite consensus disorder prediction 91 115 - -
Cca02g02732 237 ProSiteProfiles B3 DNA-binding domain profile. 140 236 IPR003340 GO:0003677
Cca02g02732 237 SMART B3_2 141 236 IPR003340 GO:0003677
Cca02g02732 237 SMART B3_2 1 84 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02732 Cca-Chr2 48748000 48750835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02732 7 106 B3 DNA Binding Superfamily AT1G49475 41.176 4.24e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca02g02732 B3 2.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02732 - - ccaj:109795878 333.183