Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02730 ATGGGTAGTTGTGGAAGAGAAGGAGCAGTGAGACAATATATAAGATCGAAGGTTCCTCGTTTAAGGTGGACTCCTGAGCTGCACCGTTGCTTTGTTCATGCTATTGATAGCCTTGGAGGTCATCATAAGGCTACGCCGAAGCTTGTTCTTCAGCTGATGGATGTTAAGGGGCTCACAATTTCACACGTGAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGCAGACAAGGTAGGACGCCCTCCCAACATAGAAACCAATCTTTtgaggagcatgatgatgggtgtgttgatgaagtgaatgatgttggtgttgaGTACTCATGTTCGAAATCCATGGGAAGAGAATCTGATTCCTTCTTCGGGCACAGTAATCTCCCTCCAAAAAGAGCAAGATTCGAGACGAGGAGTTCGATCTCAGAGAGCCTGCAATGCAGCCAAAGATTATGTGATGCAGTTCCAAATCCGTACTGTCTTTATGATTATCTGCAGCCCATGGCTGAGCACAAGGGAATAAAAGAGTTATGTGAAGCTTCAGCATGCCAGACACAACCCCATTCCTCTCTGCTACCTAATTTTCCAAACCTCACCTCATTCAAATTTCCTAACCCACAATCTGATTTCCTCCAGGTTACTAAATTAAACCAAGGAATGAGTACTTCAAAAGCAATAAATGTAGTTGTGAACACTGAGACAGCTGAGGAAGAAGTAGGAGTAGGAGGGTATGAATTGTCGTTATCACTCACATTGCCAAATCCTTCACCTCAGAGAAGTAATGCTTCTTCGGGTAGTGAGATCAGTGAAGCAATCTCATCATGCCATGGCCCTGGATTTAGCAACTACAAGGACTTCTCTACTTCTTCCACTCTCAATGAAAGAATTAATTTGGACCTATCTTTGGCCCTATGTGGTAATTGA 927 0.4164 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRTPSQHRNQSFEEHDDGCVDEVNDVGVEYSCSKSMGRESDSFFGHSNLPPKRARFETRSSISESLQCSQRLCDAVPNPYCLYDYLQPMAEHKGIKELCEASACQTQPHSSLLPNFPNLTSFKFPNPQSDFLQVTKLNQGMSTSKAINVVVNTETAEEEVGVGGYELSLSLTLPNPSPQRSNASSGSEISEAISSCHGPGFSNYKDFSTSSTLNERINLDLSLALCGN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02730 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 308 IPR044848 GO:0003700
Cca02g02730 308 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cca02g02730 308 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Cca02g02730 308 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 308 - -
Cca02g02730 308 Gene3D - 18 74 - -
Cca02g02730 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cca02g02730 308 MobiDBLite consensus disorder prediction 76 96 - -
Cca02g02730 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02730 Cca-Chr2 48714529 48718620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02730 1 74 G2-like Transcription Factor Family AT1G14600 74.684 3.46e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca02g02730 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02730 - - gmx:100787188 443.736