Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02719 ATGGCGGCATCATCTTCCTCAGCATCGCTTTTTGGATTTAGAGAAGAGGATCAGAACCAGATGAAGCAACAGCATTCCTTGACCCCACCTTCATCAACACCTCCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAACCAGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAATCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCCGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGCACCCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGGGCATTCTGCGATGCACTGGCTCAAGAGAGTGCAAGACAACCCCCAAACCTTGGTGGTGGCATTGGAAACCACTTATTCGGAACCACCAACATGGCCTTAAACCTATCTCAGGTGGGTTCTCAGATCTCAAACATGCAAGACCCTAGTACTCAGCAAACCGAACTACTTCGCCTAGGCGGCGCCACCGGTCGAACCGGTCAATTCGACCACATCCTCGGTTCACCCTTCAGACCCTCACAGCAACCTTTTTTCATGTCCGAACCGAACCAAAACTACCACCCAGAACAACAAGGTTTGGTCCCAAACAAACCGTTCCAACAAGGGTTAATGCAGTTATCTGACCACATCAGCAACAACCACCACAACAGCATGACCAGTTCTCCTTTCAACCTTCCCTTCCTCACAAACAACACCACCAACACCATTCCTGAGCACTTCAATAGTGCAAATGGAGGTGGCAACAACAACAATGAGGGCACAAACTTCTTCACAACTTCGAGtgttccttctctcttcagcaacagcaacaccaacaacagtggcaatgccatcgctcacatgtccgcaactgcactgcttcagaaagctgctcAAATGGGTGCAACTTCAAGCAACAGCACCGCTTCTTTGTTGAAAAGCTTCGGAAGTGCTTCTTCCAGCAGTGGTTCGAAATCTGAACACAGGCCACTGGTTGCTGCTGCCAACTATGGTGGAATTTTCGGAGGGAACGTGAACGTAAATGAACAGAGTAATAGTAACCTTCAAGACCTAATGAACTCGTTCGCTGTTGGTGGAAATTCTTCCATTTTCGAAGGTGGTTCTTCAGGAGGGTTTTCTGTCGCGGGATTTGAAGCATATGATCATGGCAACAATAAAGACCCGAAAGTGCATGCAATGAGTAGTAGTAGCATTGGAGGATCTGATAGACTCACCCGCGATTTTCTGGGAGTGGGTCAGATAGTCAATCTTTTGGAGGTGGTGGGGGGAATTTTCAGTGAGAAAAATCATCTTTATCTGATGCCAACAAAGTACAAACAAAGGGATTTCAAATGGTTCATTGAAACTTGA 1644 0.444 MAASSSSASLFGFREEDQNQMKQQHSLTPPSSTPPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGGGIGNHLFGTTNMALNLSQVGSQISNMQDPSTQQTELLRLGGATGRTGQFDHILGSPFRPSQQPFFMSEPNQNYHPEQQGLVPNKPFQQGLMQLSDHISNNHHNSMTSSPFNLPFLTNNTTNTIPEHFNSANGGGNNNNEGTNFFTTSSVPSLFSNSNTNNSGNAIAHMSATALLQKAAQMGATSSNSTASLLKSFGSASSSSGSKSEHRPLVAAANYGGIFGGNVNVNEQSNSNLQDLMNSFAVGGNSSIFEGGSSGGFSVAGFEAYDHGNNKDPKVHAMSSSSIGGSDRLTRDFLGVGQIVNLLEVVGGIFSEKNHLYLMPTKYKQRDFKWFIET 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02719 547 Gene3D Classic Zinc Finger 54 119 - -
Cca02g02719 547 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cca02g02719 547 SMART c2h2final6 112 142 IPR013087 -
Cca02g02719 547 SMART c2h2final6 71 93 IPR013087 -
Cca02g02719 547 SMART c2h2final6 147 167 IPR013087 -
Cca02g02719 547 MobiDBLite consensus disorder prediction 1 30 - -
Cca02g02719 547 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 515 - -
Cca02g02719 547 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 515 - -
Cca02g02719 547 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Cca02g02719 547 MobiDBLite consensus disorder prediction 31 46 - -
Cca02g02719 547 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Cca02g02719 547 Gene3D Classic Zinc Finger 125 204 - -
Cca02g02719 547 MobiDBLite consensus disorder prediction 1 55 - -
Cca02g02719 547 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02719 Cca-Chr2 48597565 48603085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02719 41 522 IDZ Gene Family AT2G02070 49.358 2.14e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g02719 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02719 K25870 - gmx:100799389 738.799