Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02708 ATGTTTCAAAGCGCAGTCACTCCCTTCCTAACTACGCAAACGCAAAGAGGGTTTCTTTCGTATCATTCAAACGCTAAGGCAATGGACACGTCAAACCCTGCTGTATTTGTAAATGGTGAGTTGATTCCGAATTTTATTGGGAAGAAAGTGCGGGCGGTGGTTCAGGTGAATCGGTGTGATGGTGGGGCTGCCACGGCCAAATCCACTGATGACTGTCAATTAACCATAAAAGGGTTGCCTCAAGTCCCTCTTATGAACTATATTGAAGTCATTGGCATTGCTGAAAGTAGCAACTCTATTGGTGCCGAAGTATGGACTGACTTTGGCAACACGTTTGATACCGACTCTTACAATCAGTTGTGCCAACTAGCAAATGGTGAATTCAAAAGTCTGTTTCTCTAG 402 0.4428 MFQSAVTPFLTTQTQRGFLSYHSNAKAMDTSNPAVFVNGELIPNFIGKKVRAVVQVNRCDGGAATAKSTDDCQLTIKGLPQVPLMNYIEVIGIAESSNSIGAEVWTDFGNTFDTDSYNQLCQLANGEFKSLFL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02708 133 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 28 133 - -
Cca02g02708 133 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 28 133 - -
Cca02g02708 133 SUPERFAMILY Nucleic acid-binding proteins 33 132 IPR012340 -
Cca02g02708 133 Pfam Replication factor A protein 3 28 127 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca02g02708 133 CDD RPA3 33 132 - -
Cca02g02708 133 Gene3D - 28 133 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02708 Cca-Chr2 48497562 48499240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02708 28 133 Core DNA Replication Machinery Family AT4G18590 62.264 1.31e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02708 K10740 - gmx:100781484 196.052