LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g02706	ATGGGATCGAAAGTTGTTCCACAATGGGCATCGAAGCCTTGCGCCATGGGAATCGACGAAGCCGGAAGAGGCCCCGTTTTAGGGCCTATGGTCTATGGTTGCTTATACTGTGCTCAGTCCTACCTTAAGACCCTAGCTACATTGAGTTTTGCAGATTCCAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGAAACCTTAAAAACCAATGATTCTATTGGATGGGATGTTGATGTCATTGACCCACGAGAACTCTCCGCTAAAATGCTTAAGAAGAATAAGATAAACTTGAACGAGATTTCACACAACTCGGCCATGGGCCTCATTGATAGGGTACTGAAAATGGGAGTGCTTCTAACTGAGGTTTATATAGATACAGTTGGAGATGCAGGGAAATATGAAGTGAAGCTGTCTAATGCTTATCCCTCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTACCCGGTTGTCAGTGGAGCAAGCATAGTTGCTAAGGTCACAAGGGACCGTGCTTTGAGAGAATGGGTGCTTGATGAGACTGCTGAAAACATGCAGAGGAATTTTGGCTCTGGTTATCCCGGAGATCCACAAACAAAGTCTTGGCTAGAGAATCACAAACATCATATCTTTGGATTTCCCACATTGGTCCGATTTAGTTGGGGAACCTGCAACACTTATTTTAAAGATATTGTTGAAGTGTTATGGGAATCTGACAATTTGGATGAAGATGGTGGTAGCAGTAATAGTAATGGCAAGCGACAGTTGAAATTAAGCAATGTTGGCTCGGAAACTAGAGCACCTCACTCATTTCTAGAAGTGATGCTCAACTTTGAATCTGAACGTGGCGGGGGGGTGGGGGATACCAGTTCTCCCCAACAGGCCTGCATGCTTCATCCCTAA	909	0.4389	MGSKVVPQWASKPCAMGIDEAGRGPVLGPMVYGCLYCAQSYLKTLATLSFADSKTLKEEKREELFETLKTNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHNSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEVKLSNAYPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMQRNFGSGYPGDPQTKSWLENHKHHIFGFPTLVRFSWGTCNTYFKDIVEVLWESDNLDEDGGSSNSNGKRQLKLSNVGSETRAPHSFLEVMLNFESERGGGVGDTSSPQQACMLHP	302

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g02706	302	SUPERFAMILY	Ribonuclease H-like	14	231	IPR012337	-
	Cca02g02706	302	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	34	-	-
	Cca02g02706	302	Pfam	Ribonuclease HII	16	226	IPR024567	GO:0004523
	Cca02g02706	302	Gene3D	-	1	185	IPR036397	GO:0003676
	Cca02g02706	302	MobiDBLite	consensus disorder prediction	244	264	-	-
	Cca02g02706	302	ProSiteProfiles	Ribonuclease (RNase) H type-2 domain profile.	13	235	IPR024567	GO:0004523
	Cca02g02706	302	TIGRFAM	TIGR00729: ribonuclease HII	16	228	IPR004649	GO:0004523\|GO:0016070
	Cca02g02706	302	Gene3D	Ribonuclease hii. Domain 2	186	232	IPR023160	GO:0004523
	Cca02g02706	302	PANTHER	RIBONUCLEASE	4	264	-	-
	Cca02g02706	302	PANTHER	RIBONUCLEASE H2 SUBUNIT A	4	264	IPR001352	GO:0003723\|GO:0004523

Showing 1 to 10 of 11 entries

Previous1 2Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g02706	5	267	Core DNA Replication Machinery Family	AT2G25100	66.160	8.80e-127	361

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g02706	K10743		-	gmx:100779875	508.449

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca02g02706	02	48489223	48492873	Cca02g02706	02	48489223	48492873	ECH

Showing 1 to 1 of 1 entries