Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02706 ATGGGATCGAAAGTTGTTCCACAATGGGCATCGAAGCCTTGCGCCATGGGAATCGACGAAGCCGGAAGAGGCCCCGTTTTAGGGCCTATGGTCTATGGTTGCTTATACTGTGCTCAGTCCTACCTTAAGACCCTAGCTACATTGAGTTTTGCAGATTCCAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGAAACCTTAAAAACCAATGATTCTATTGGATGGGATGTTGATGTCATTGACCCACGAGAACTCTCCGCTAAAATGCTTAAGAAGAATAAGATAAACTTGAACGAGATTTCACACAACTCGGCCATGGGCCTCATTGATAGGGTACTGAAAATGGGAGTGCTTCTAACTGAGGTTTATATAGATACAGTTGGAGATGCAGGGAAATATGAAGTGAAGCTGTCTAATGCTTATCCCTCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTACCCGGTTGTCAGTGGAGCAAGCATAGTTGCTAAGGTCACAAGGGACCGTGCTTTGAGAGAATGGGTGCTTGATGAGACTGCTGAAAACATGCAGAGGAATTTTGGCTCTGGTTATCCCGGAGATCCACAAACAAAGTCTTGGCTAGAGAATCACAAACATCATATCTTTGGATTTCCCACATTGGTCCGATTTAGTTGGGGAACCTGCAACACTTATTTTAAAGATATTGTTGAAGTGTTATGGGAATCTGACAATTTGGATGAAGATGGTGGTAGCAGTAATAGTAATGGCAAGCGACAGTTGAAATTAAGCAATGTTGGCTCGGAAACTAGAGCACCTCACTCATTTCTAGAAGTGATGCTCAACTTTGAATCTGAACGTGGCGGGGGGGTGGGGGATACCAGTTCTCCCCAACAGGCCTGCATGCTTCATCCCTAA 909 0.4389 MGSKVVPQWASKPCAMGIDEAGRGPVLGPMVYGCLYCAQSYLKTLATLSFADSKTLKEEKREELFETLKTNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHNSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEVKLSNAYPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMQRNFGSGYPGDPQTKSWLENHKHHIFGFPTLVRFSWGTCNTYFKDIVEVLWESDNLDEDGGSSNSNGKRQLKLSNVGSETRAPHSFLEVMLNFESERGGGVGDTSSPQQACMLHP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02706 302 SUPERFAMILY Ribonuclease H-like 14 231 IPR012337 -
Cca02g02706 302 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Cca02g02706 302 Pfam Ribonuclease HII 16 226 IPR024567 GO:0004523
Cca02g02706 302 Gene3D - 1 185 IPR036397 GO:0003676
Cca02g02706 302 MobiDBLite consensus disorder prediction 244 264 - -
Cca02g02706 302 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 13 235 IPR024567 GO:0004523
Cca02g02706 302 TIGRFAM TIGR00729: ribonuclease HII 16 228 IPR004649 GO:0004523|GO:0016070
Cca02g02706 302 Gene3D Ribonuclease hii. Domain 2 186 232 IPR023160 GO:0004523
Cca02g02706 302 PANTHER RIBONUCLEASE 4 264 - -
Cca02g02706 302 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 264 IPR001352 GO:0003723|GO:0004523
Cca02g02706 302 CDD RNase_HII_eukaryota_like 16 232 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02706 5 267 Core DNA Replication Machinery Family AT2G25100 66.160 8.80e-127 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02706 K10743 - gmx:100779875 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02706 02 48489223 48492873 Cca02g02706 02 48489223 48492873 ECH