Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca02g02701 | ATGTTTCCGGAGACCAGCGCAACGCGGTGGCCAACTCACCCCACTCAGTGGACTCGCTTCCACGACAAGCTCTTCGAGCGGGCGCTGCTCGCCGTGCCGGAGGACATGCCCGACAGGTGGCAGAAGATCGCCGACCAGGTCCCCGGCAAGTCCGCGGCCGAGGTCAGGGACCACTACGACGCCCTCGTTCACGACGTCTTCGAGATTGACTCGGGCCGAGTCGAGGTCCCCAGTTACGTCGATGACTcgccgccgcgcgcgcccaccgccgctgccgGAACCTCCTCCTGGGACTCTGCTAATCAGATCTCATTCGGCTCCAAGCCTAAGCAAGGCGACAACGAAAGGAAAAAGGGCACGCCTTGGACTGAAGAGGAACACAGGCTGTTTCTGATTGGACTGAGTAAATTTGGGAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGGACACCAACTCAAGTGGCGAGTCATGCTCAGAAGTACTTTCTTCGCCAGAACTCGGTGAAGAAAGAGAGGAAGAGGTCAAGCATTCATGACATAACCACTGTGGATAGTAACTCCGTGCCTGTGCCCATTGATCAGAATTGGGTTCCTCCTCCTGGTACTGCTTCCGTGCAGCAGCCACAAGACATGCAGCAATACCCACCAAGCAACTTGCATGATCAAATGGGACAATTTGGGTACTCCAACTATGGCTTTCAAATGTGA | 720 | 0.5167 | MFPETSATRWPTHPTQWTRFHDKLFERALLAVPEDMPDRWQKIADQVPGKSAAEVRDHYDALVHDVFEIDSGRVEVPSYVDDSPPRAPTAAAGTSSWDSANQISFGSKPKQGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGTASVQQPQDMQQYPPSNLHDQMGQFGYSNYGFQM | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca02g02701 | 239 | SMART | sant | 13 | 65 | IPR001005 | - | |
| Cca02g02701 | 239 | SMART | sant | 118 | 168 | IPR001005 | - | |
| Cca02g02701 | 239 | PANTHER | SYRINGOLIDE-INDUCED PROTEIN 1-3-1B | 12 | 239 | - | - | |
| Cca02g02701 | 239 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 114 | 170 | IPR017930 | - | |
| Cca02g02701 | 239 | SUPERFAMILY | Homeodomain-like | 116 | 171 | IPR009057 | - | |
| Cca02g02701 | 239 | Pfam | Myb-like DNA-binding domain | 121 | 166 | IPR001005 | - | |
| Cca02g02701 | 239 | Gene3D | - | 12 | 76 | - | - | |
| Cca02g02701 | 239 | ProSiteProfiles | Myb-like domain profile. | 17 | 63 | IPR001005 | - | |
| Cca02g02701 | 239 | MobiDBLite | consensus disorder prediction | 77 | 122 | - | - | |
| Cca02g02701 | 239 | ProSiteProfiles | SANT domain profile. | 117 | 170 | IPR017884 | - | |
| Cca02g02701 | 239 | MobiDBLite | consensus disorder prediction | 89 | 109 | - | - | |
| Cca02g02701 | 239 | Gene3D | - | 120 | 172 | - | - | |
| Cca02g02701 | 239 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 12 | 239 | IPR043363 | - | |
| Cca02g02701 | 239 | SUPERFAMILY | Homeodomain-like | 15 | 71 | IPR009057 | - | |
| Cca02g02701 | 239 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 117 | 169 | IPR006447 | GO:0003677 | |
| Cca02g02701 | 239 | CDD | SANT | 17 | 59 | IPR001005 | - | |
| Cca02g02701 | 239 | ProSiteProfiles | Myb-like domain profile. | 114 | 166 | IPR001005 | - | |
| Cca02g02701 | 239 | CDD | SANT | 121 | 166 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca02g02701 | Cca-Chr2 | 48433885 | 48435770 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Cca02g02701 | Myb_DNA-binding | 4.3e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca02g02701 | - | - | gmx:547481 | 418.698 |