Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02693 ATGCTGGCGAAAGACCAGGCCACGTGTCTGACCGGAAACCCCATCGACGACTGCTGGCGGTGCGACCCGAACTGGGCGGCGAACCGGCAGAAGCTGGCGGACTGCGGCGTGGGGTTCGGGCGCGACGCCCTCGGCGGCAAGGGCGGCCAGATCTACGTGGTGACGGACTCCTCCGACCGAGACCCGGCGAACCCCGTTCCGGGGACGCTCCGGCACGCGGTGATCCAAGACGAGCCTCTGTGGATCGTGTTCGGCGGCGACATGACGATCACGCTGAAGCACGAGCTGATCTTCAACAGCTTCAAGACGGTGGACGGGCGCGGCGCCAACGTGCAGGTGAGCGGGCACGGGTGCATCACGCTCCAGTACGTGTCGAACATCATCATCCACAACATCCACGTGCACCACTGCACCCCCTCCGGGAACACCAACGTCCGCGCCAGCCCCACGCACGTCGGCTGGAGAGGGAAATCGGACGGCGACGGGATTTCCATCTTCGGCTCCCGGAAGATCTGGATCGACCATTGCTCCCTCTCTTACTGCACGGACGGCTTGATCGACGCCATCATGGGGTCCACCGGAATCACCATCTCCAACAGTCACTTCGCGCACCACGACGAGGTTATGCTTCTTGGACACGACGATAAGTACTTGCCCGACAGGGGAATGCAAGTTACCATCGCCTTTAATCACTTCGGGGAGGGTTTGGTGCAGCGCATGCCACGCTGCAGACTCGGTTATATCCACGTGGTGAATAATGATTTCACCCAGTGGCAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATTAACAGCCAGGGGAATCGTTACACCGCTCCCGCCGACCCCGATGCCAAAGAGGTGACGAAGCGCGTGGACACGGACGATAGAGAGTGGAGTGGTTGGAATTGGAGGACAGAAGGGGATATAATGGTAAATGGAGCGTTCTTTGTGCCTTCCGGTGCGGGGGTCAGTGCTCAGTACGCGGAGGCCACCAGTGTGCAACCTAAATCCGCCGTGCAAATTGACCAGCTCACTATGTATTCCGGTGTGTTTGGTGATCCCAGGGATAATGGGGATTTATATCCGGGTTTCAACGGTGGTGGGACCGTGACCGGAGCCACCAGCAAAGGCAACAGCGCGGGGTCCACCAGCAGTGACGATGGGGACTTCTTCGGGATGATATTCAAAGGTAGTAGCAGCAGCCAAGCACCAGCACCATCACCTTCTTCGTCCATTGTGTTTGTTTCAACCTTTTTGTCCCTTTTCATTATTTTCATTTTGGACTCTACCACCAAACATGCTCTTCTATTATCATTACTATGA 1329 0.5779 MLAKDQATCLTGNPIDDCWRCDPNWAANRQKLADCGVGFGRDALGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFGGDMTITLKHELIFNSFKTVDGRGANVQVSGHGCITLQYVSNIIIHNIHVHHCTPSGNTNVRASPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSHFAHHDEVMLLGHDDKYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPADPDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGVSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNSAGSTSSDDGDFFGMIFKGSSSSQAPAPSPSSSIVFVSTFLSLFIIFILDSTTKHALLLSLL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02693 442 SMART amb_all 87 284 IPR002022 -
Cca02g02693 442 Pfam Pectate lyase 95 276 IPR002022 -
Cca02g02693 442 SUPERFAMILY Pectin lyase-like 13 330 IPR011050 -
Cca02g02693 442 PANTHER PECTATE LYASE 18-RELATED 3 374 IPR045032 GO:0030570
Cca02g02693 442 PANTHER PECTATE LYASE 3 374 - -
Cca02g02693 442 Gene3D - 12 354 IPR012334 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 159 180 IPR018082 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 239 258 IPR018082 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 303 327 IPR018082 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 332 355 IPR018082 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 35 52 IPR018082 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 95 111 IPR018082 -
Cca02g02693 442 PRINTS Pollen allergen Amb family signature 59 84 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02693 Cca-Chr2 48317265 48322555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02693 5 438 Polysaccharide Lyase AT3G53190 66.362 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02693 K01728 - gmx:100808438 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02693 02 48317265 48322555 Cca02g02693 02 48317265 48322555 ECH