Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02640 ATGGTTGCGCTTCATGCGTGTGGCGTGGTCTTGTTTGCATGGGTCGTGCAAGCGGTATCGGGTGGGAGCTGCCCCTCTTTGATTGGCTGCGGCAATATCGGTAACATCACTTTTCCTTTCACCGACACACGTCATCCTCACTGTGGCATACTGGTGATATATGGCTGTGATGAGAAGGAACCAGAGACCAAAAAAACCATTAAAAATAACAACCGATGGTTCGATATTGTAAGGCTTGAGGAGCAGTTTTCGATTGTCATTAGAGACGATAAACTCCACGACCTCTTGCTACAAAGAAGTTGCGAGACCTTCGACCAGCAAAAAACTGCTTTCACAGTCAACACACCTTTGGCCCTCTCTCATGTAAACTATAACATAGACATATTCAGATGTAAACACGCCCTCCACGATCCGCCACACAATTATGTTTCTAATTCTACACTTTGCAAAAATGACACACTCTATTCCAGGTTCGTAATTGACCCCTCCAGAGACAATCATGATATCAAAGGATGTTCAATGGTTCGGCTTCCAACCACCGCCCAGGTTAGCCAGCTTCAGCTTAATCACACTGACCTTTTCAATATCTTAACGGATGAAATCGCCGTCCAAATAGAGTTAACTCGGGATTGTTCTACTTGTCACTTTGCCCACGCTGGCCAATGTCGCCTTGACAACACCGGAAAATTTTATTGTCACAAAGGGAAATCTATAAAGACTCGTCTTATAGTGGCAAGTGTATCTGGCGCTGGAGCCGTAGGAGTTGTGATATTTCTGGTTTGGTGCATTAGAAGAAGGTTTTACAAGAATAAAAACCCCACCCACCAAATAATCGAGATGTTTCTGAACACCCACGGTCACCTTGCAGCCAATAGATACAGTTATTCAGAGATAAAGAAGGCCACCAACTCCTTCAAAAACAAATTGGGTGAAGGAGGGTATGGTAGTGTTTACAAGGGGAGGCTACATGATGGAAGTCTTGTGGCTGTAAAAGTTTTAAGCGACTCCAAAGGTAACGGCGAGGAATTTATCAATGAAGTTGCTAGCATCAGTGTCACTTCTCATGTTAACATCGTTACTTTACTCGGATTTTGTCTACAAGGTTCCAAAAGAGCTTTGATTTACAAGTACATGCCCAATGGCTCACTTGAGAAGTTCATATATGAAGAAAAGGATCCACTCAAGCTCAGTCTTCAATTAAGTTGCAAAACCATCTATAATATTGCAATTGGCGTTGCTCGTGGATTAGAGTACTTACACAGAGGTTGCAATACTAAAATCTTGCATTTTGATATAAAACCTCACAATATATTGCTAGATGAGGATTTCTGCCCAAAGATTTCAGATTTTGGGCTAGCTAAAATATGTCCACAAAAAGAAAGCATTGTATCCTTATTGGGAACCAGGGGCACTGCGGGATACATTGCTCCTGAGGTTTTCTCTAGAAATTTTGGAGGAGTCTCCCATAAATCAGATGTATACAGCTACGGAATGATGGTTTTGGAAATGGTTGGGGGAAGGATGAATAACAATGTTGAAGTTGAATGTTCAAGTGAAATATATTTCCCACATTGGGTTTACAAGCGTCTTGAACTGAATCAGGAGCCTAGTTTGCGAAGCATAAAAAATGAAACTGATAAAGAAATGATACGAAAGTTGATTATAGTGAGCTTATGGTGCATCCAAACAGACCCTTCAAATAGGCCAGCAATGAGGAATGTGGTAGATATGATGGAAGGAAGCATGGAGTCCTTGCAAATACCACCAAAACCTTATCTCTCTTCACCTCCGAGATCCTCAGATCACAACACCCACACATCTCAGACTACGTTTCCTTCAGAGTACTAA 1848 0.4199 MVALHACGVVLFAWVVQAVSGGSCPSLIGCGNIGNITFPFTDTRHPHCGILVIYGCDEKEPETKKTIKNNNRWFDIVRLEEQFSIVIRDDKLHDLLLQRSCETFDQQKTAFTVNTPLALSHVNYNIDIFRCKHALHDPPHNYVSNSTLCKNDTLYSRFVIDPSRDNHDIKGCSMVRLPTTAQVSQLQLNHTDLFNILTDEIAVQIELTRDCSTCHFAHAGQCRLDNTGKFYCHKGKSIKTRLIVASVSGAGAVGVVIFLVWCIRRRFYKNKNPTHQIIEMFLNTHGHLAANRYSYSEIKKATNSFKNKLGEGGYGSVYKGRLHDGSLVAVKVLSDSKGNGEEFINEVASISVTSHVNIVTLLGFCLQGSKRALIYKYMPNGSLEKFIYEEKDPLKLSLQLSCKTIYNIAIGVARGLEYLHRGCNTKILHFDIKPHNILLDEDFCPKISDFGLAKICPQKESIVSLLGTRGTAGYIAPEVFSRNFGGVSHKSDVYSYGMMVLEMVGGRMNNNVEVECSSEIYFPHWVYKRLELNQEPSLRSIKNETDKEMIRKLIIVSLWCIQTDPSNRPAMRNVVDMMEGSMESLQIPPKPYLSSPPRSSDHNTHTSQTTFPSEY 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02640 615 MobiDBLite consensus disorder prediction 596 615 - -
Cca02g02640 615 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Cca02g02640 615 SUPERFAMILY Protein kinase-like (PK-like) 283 578 IPR011009 -
Cca02g02640 615 Pfam Protein kinase domain 306 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02640 615 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 30 614 - -
Cca02g02640 615 ProSiteProfiles Protein kinase domain profile. 303 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02640 615 SMART serkin_6 303 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02640 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Cca02g02640 615 MobiDBLite consensus disorder prediction 586 615 - -
Cca02g02640 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 614 IPR045874 GO:0004672
Cca02g02640 615 Gene3D Phosphorylase Kinase; domain 1 281 377 - -
Cca02g02640 615 Gene3D Transferase(Phosphotransferase) domain 1 378 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02640 Cca-Chr2 47556326 47558822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02640 200 591 Receptor kinase-like Gene Family AT5G38260 50.124 4.68e-127 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca02g02640 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02640 - - gmx:100785979 949.503