Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02635 ATGGTCTTCCTTCCTATTTTATACCAGCTTTTGCTTGTGATTCATGTTTCAGCTGACAATGGAAAGTGTCCACCATCTTTCGACTGTGGGTTTCTTGGCCCTATTAAGTTTCCCTTCACAACCACTAAGCAACCACACTGCGGCTTACTCGCTATAGATGGCTGCCAACAACACAATCCATCCGCTCCCAAAACCCTCAAACTAACGTCAAAATCCTATCCTGTTCTACAGGTTGAACCTCGTTCCATAGTCATCACAGATGACCAACAAGATCGTTATTTGTCAACCAAAAATTGCAAAGCCTTCGCCAACAATTTTACCCTTCCTCACACCTCTTCCTTAGCTTCTTTCAACATCAAATATAGTATCACACTCTTCAGATGCAATCGCTCCCTCAGGATCACCCTTCCCAAATACTATTATAAATACTCAAACTGTTCTCAGTACGACATCTACTATGGCCCTCCAAATACTCAGACTCCTCTCCCCTTCAACTACCCCACCGCTTTAGCACCATGTTCAACCATTCAGCTTGCAACACAAGGAAAGTCTACTCAGGACCCCTTTTACTTTCTATCCGCTAGTATCGCTATTCAAGTACGATTATCTGATGCTTGTGAAACCTGTCTTCAACGTCAAGGCCAATGTTTACTTAACACGGAAGGAAAACCCTATTGCGCCAACGTATATAATCTTCAATTAATTGGATTTCTCCCTCCTTATTGGTTTCTAGGTATTGGACTCCCTGGCATTATTATAATTGGGCTACTCATTGTATGGCACCGGAAAGCAAGATGTGTGCCTGGTATATACTCAAATCCATACCTAGAGAGTGAGAGTATCTACATTGGGGTCCCTGTGTTCAAGTATAAGGATCTTGAAATAGCGACAAAACGTTTTGACCGTTCTAGAGAACTTGGAGAAGGAGGATTTGGGATTGTTTACTATGGAAAACTTATCGATGGACGTGAAGTTGCTGTGAAGCGCCTATATGAGCACAACTACAGGCGATTAGAACAATTCATGAATGAAATCAAGATCCTCACACACTTACGCCACAAAAATTTGGTGTCTCTTTATGGCTGCACGTCACGTCACAGCCGTGAACTATTGCTCGTGTTTGAATACATTTCAAATGGGACGGTGGCCAGTCACCTCCATCATCATGGATCAACAAATCGTAGCTTTTTGCCATGGCCTATCCGAATCAAAGTTGCCATAGAGACTGCTACTGCGTTGGCCTATCTTCATGCTTCTGACatcattcaccaTCTAGCCATAAGGAAGATTCAAAAAAGTGCAATGGCTCAGTTGGTGGATACTTCCCTTGGTTTTGAGTCAAATAGAGATGTTAAAAGGCAAATAACATCAATGGCAGAATTGGCTTTTCAGTGCTTGCAACGAGATAAAGAATTGAGACCCTCCATGGATGAAGTTTTGGAGTTGTTGAAGGCAATCGAAAGTCACAAGGATGGAAATGCACATGTGGAGGAAGTAAAAGTTGAGGGTGAAGGTCCATCTTTAGCTGATGGTGATGAAGTGGAATTGTTGAGAAGTATGAAGGTGTGGCCTTCGCCAAAAGCTGTGGCAGATGAATGGGACAGTCAATCCACTAGTCCTAATGTCAATGCTCAGTAA 1638 0.4243 MVFLPILYQLLLVIHVSADNGKCPPSFDCGFLGPIKFPFTTTKQPHCGLLAIDGCQQHNPSAPKTLKLTSKSYPVLQVEPRSIVITDDQQDRYLSTKNCKAFANNFTLPHTSSLASFNIKYSITLFRCNRSLRITLPKYYYKYSNCSQYDIYYGPPNTQTPLPFNYPTALAPCSTIQLATQGKSTQDPFYFLSASIAIQVRLSDACETCLQRQGQCLLNTEGKPYCANVYNLQLIGFLPPYWFLGIGLPGIIIIGLLIVWHRKARCVPGIYSNPYLESESIYIGVPVFKYKDLEIATKRFDRSRELGEGGFGIVYYGKLIDGREVAVKRLYEHNYRRLEQFMNEIKILTHLRHKNLVSLYGCTSRHSRELLLVFEYISNGTVASHLHHHGSTNRSFLPWPIRIKVAIETATALAYLHASDIIHHLAIRKIQKSAMAQLVDTSLGFESNRDVKRQITSMAELAFQCLQRDKELRPSMDEVLELLKAIESHKDGNAHVEEVKVEGEGPSLADGDEVELLRSMKVWPSPKAVADEWDSQSTSPNVNAQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02635 545 Pfam Protein tyrosine and serine/threonine kinase 303 430 IPR001245 GO:0004672|GO:0006468
Cca02g02635 545 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 424 544 - -
Cca02g02635 545 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 424 544 IPR044652 -
Cca02g02635 545 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 7 423 - -
Cca02g02635 545 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Cca02g02635 545 SUPERFAMILY Protein kinase-like (PK-like) 279 423 IPR011009 -
Cca02g02635 545 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 423 IPR044652 -
Cca02g02635 545 Gene3D Phosphorylase Kinase; domain 1 275 374 - -
Cca02g02635 545 Gene3D Transferase(Phosphotransferase) domain 1 375 427 - -
Cca02g02635 545 ProSiteProfiles Protein kinase domain profile. 300 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02635 545 Gene3D Transferase(Phosphotransferase) domain 1 428 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02635 Cca-Chr2 47513334 47515790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02635 425 544 Receptor kinase-like Gene Family AT1G25390 42.276 1.50e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca02g02635 PK_Tyr_Ser-Thr 5.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02635 - - gmx:100790240 574.704