LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g02626	ATGGTTTCGAGGTCATATTCTAACTTGTTAGATCTTACTTCCTGTGGCTCCCCAAGTTTTGGTCGCGAGAAGAAAAGGCTCCCTCGAGTGGCAACTGTTGCTGGAGTATTGTCAGAGCTAGATGATGAGACCGGCAACAGTGTTGGCTCTGATACTCCATCCTCAGTCTCTCAAGAGAGGATGATCATTGTTGGTAACCAGCTTCCATTAAGGGCACACAGAAAAGACAATGGTACTTGGGAGTTCACATGGGATGAAGACTCGCTTCTTTTGCAGCTGAAAGATGGTCTTGGGGATGATGTGGAAACTGTCTATATTGGTTGTCTTAAAGAGGAGATTGAGCCAAGTGAGCAAGATGATGTTGCTCAGTACTTGCTTGACACTTTCAAATGCGTCCCCACGTTCCTCCCTCCTGAGCTTTTTACTAAATTCTATCATGGATTCTGCAAACAACATCTATGGCCTTTATTTCACTACATGCTTCCACTGTCACCTGATCTTGGAGGTCGATTCGATAGGTCCCTTTGGCAAGCTTATGTTTCAGTGAACAAGATATTTGCGGATAAAGTGATGGAAGTCATTAGCCCTGATGATGATTTTGTGTGGGTTCATGACTACCATCTGATGGTACTCCCAACTTTTTTGCGAAAGAGATTTAACAGGGTGAGGCTAGGATTCTTCCTCCATAGTCCATTTCCTTCATCTGAGATATACCGAACCCTTCCTGTTAGGGATGAACTTCTTAGAGCTCTTCTGAATTCTGACCTTATTGGGTTTCATACTTTTGATTATGCCAGGCATTTCCTTTCCTGCTGCAGTAGAATGCTTGGGATTTCTTACCAATCTAAGCGGGGCTATATTGGTCTTGAGTACTATGGTAGAACTGTAAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGCTCCAATCAGTCATGAGTCATCCTGAGACAGAAAACAAGGTTGCAGAGTTAAAAAACCAATTCAGAGATCAAATTGTGCTGCTTGGGGTCGATGACATGGATATATTCAAAGGAATCAGCTTAAAACTTTTGGCCATGGAACAATTGCTTTTACAACATCCTGATAAGAGGGGCAGAGTTGTTCTGGTCCAAATTGCAAACCCTGCAAGAGGCCGGGGAAAGGATGTCCAGGAGGTGCAAAGTGAAACTTATGCCACGGTGAAGAGGATAAATGATACATTTGGAAGGTCTGGATACACACCTGTAGTCTTGATTGATACACCACTTCAGAGTTATGAGCGAATTGCTTACTATGTGATTGCAGAATGTTGCCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCCTATGAATATGTAATTTGTAGACAAGGAAATGAGAAGATAGATGAGATTTTAGGGACAGACCCTCTCGCTCAAAAGAGGAGCATGCTGGTGGTGTCTGAGTTTATTGGCTGCTCCCCTTCATTGAGTGGGGCAATTCGAGTAAATCCATGGAACATTGATGCTGTTGCTGAAGCTATGGATTCTGCGCTGATGGTCCCGGAGGCTGAAAAGCAGATGCGGCACGAGAAGCATTATAGGTATGTTAGTACGCATGATGTTGCATATTGGGCACGTAGCTTCTTGCAGGATCTGGAAAGGGCATGCAGAGAGCATCTGAGGAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGCTTTCGAGTGATTGCTTTGGATCCAAACTTTAGAAAGCTATCCGTGGAACATATTGTTTCAGCTTATAAGAGGACCAAGCACCGAGCAATTCTTCTGGATTATGATGGTACTATGGTGCAGCCTGGATCAATGAGTACAACACCTAATGCTGAAGCCGTTAGCCTCTTGAACAGCTTGTGCAGGGACACCAAGAATTGTGTTTTCATTGTAAGTGGAAGGGAGAGAAAGACTcttactgaatggttttcttcttgtgaaaggatgggaattgctgcagagcatggttattttgtgagGGCAAATCAAAATgcagaatgggaagcttgtgttccggtgcctgattttgagtggaaacagattgccgagccagttatgcagttatatacggaaacaaccgatggttctaacatagaggccaaagaaagcgctcttgtttggaattatgagtatgcagatcgagactttggttcatgccaagctaaggagctttttgatcatttggaaagtgttcttgccaatgagcctgtttctgttaaaagcagtccaaacattgtggaagtaaagcctcagggtgtgagtaagggtattgtagcagaacgtcttctcttaacaatgcaacaaaagggagtgactcccgattttgttctatgcattggggatgacagatcagatgaggacatgtttggggtgataatgaatgcaagggcatcactatctccagttgctgaggtgttcccttgcaccgttggccagaaacctagcaaggccaagtattacttggacgacacaagcgaGATTTTGAGAATGTTGCAGGGCCTTGCCAATGCTTCAGAGATGCCTACTAGAATTTCTTCCTTACCTAGTCATTAA	2559	0.3419	MVSRSYSNLLDLTSCGSPSFGREKKRLPRVATVAGVLSELDDETGNSVGSDTPSSVSQERMIIVGNQLPLRAHRKDNGTWEFTWDEDSLLLQLKDGLGDDVETVYIGCLKEEIEPSEQDDVAQYLLDTFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVRLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGISYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVMSHPETENKVAELKNQFRDQIVLLGVDDMDIFKGISLKLLAMEQLLLQHPDKRGRVVLVQIANPARGRGKDVQEVQSETYATVKRINDTFGRSGYTPVVLIDTPLQSYERIAYYVIAECCLVTAVRDGMNLIPYEYVICRQGNEKIDEILGTDPLAQKRSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPEAEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACREHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMVQPGSMSTTPNAEAVSLLNSLCRDTKNCVFIVSGRERKTLTEWFSSCERMGIAAEHGYFVRANQNAEWEACVPVPDFEWKQIAEPVMQLYTETTDGSNIEAKESALVWNYEYADRDFGSCQAKELFDHLESVLANEPVSVKSSPNIVEVKPQGVSKGIVAERLLLTMQQKGVTPDFVLCIGDDRSDEDMFGVIMNARASLSPVAEVFPCTVGQKPSKAKYYLDDTSEILRMLQGLANASEMPTRISSLPSH	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g02626	852	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	842	IPR001830	GO:0003824\|GO:0005992
	Cca02g02626	852	SUPERFAMILY	HAD-like	591	837	IPR036412	-
	Cca02g02626	852	Pfam	Glycosyltransferase family 20	60	544	IPR001830	GO:0003824\|GO:0005992
	Cca02g02626	852	CDD	HAD_TPP	592	828	-	-
	Cca02g02626	852	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	60	548	-	-
	Cca02g02626	852	Gene3D	Glycogen Phosphorylase B;	53	311	-	-
	Cca02g02626	852	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6	1	842	-	-
	Cca02g02626	852	Pfam	Trehalose-phosphatase	594	827	IPR003337	GO:0003824\|GO:0005992
	Cca02g02626	852	CDD	GT20_TPS	60	544	IPR001830	GO:0003824\|GO:0005992
	Cca02g02626	852	TIGRFAM	T6PP: trehalose-phosphatase	589	837	IPR003337	GO:0003824\|GO:0005992
	Cca02g02626	852	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	593	795	IPR006379	-
	Cca02g02626	852	Gene3D	-	590	704	IPR023214	-
	Cca02g02626	852	Gene3D	-	716	847	IPR023214	-
	Cca02g02626	852	Gene3D	Glycogen Phosphorylase B;	312	528	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g02626	Cca-Chr2	47411011	47415643	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g02626	1	837	Trehalose Biosynthesis Gene Families	AT4G17770	79.762	0.0	1427

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g02626	K16055		-	gmx:100782799	1650.18