Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02611 ATGATTTTCCATCATGAATGCAGGTTCAAACTGATCATGGCTAAAGCTAAAATGCCAGGCATGGATGCCCTTTCTTTTCTTGATATAGTGCTTGAAAAAGACATTCCTGTTATCTTTATTTACTCCGGAGGATTTGATGATGTAACTCAGAAAGCTTTAGCTACAGGACTATGTTATTTCCTTAAGGAACCAATCTGTGCAAATGATCTCAAATATTTATGGCAACATGTGTATCACTCAAGAGCCCATTCAGCCAAAAAAATCCAAAATGCGTACTTTCAGAACACGAAGTACCATGCAAAGGGATTAGAGAATATGAAGATGAAACAGGTTCTTAGAGGAAATGGAGAAAGAAACAAAGATGGTAATGAGGACATGGCCAAAAAGAAGAAAATAGTTGATGAAAACACAGAGCATGGTTCATTGAGATCAACCCAGATGGAGTTCAACAACAGTTATTATAGCAGTGAGGAAAAGCGTGCAATTGTTTGGACTCCTGAGCTGCATCTAAAGTTTACAGAAGCCATACATATGTTAGGAGGAGAGAACAGGGCTCGTCCAAAACAGATATTGAGTCACATGAATGAGCCTCTCCTGACAGTTCGCCAGGTTGCAAGTCACCTGCAGAAACACCAGTTGCGGTTAAAGCGTAAAGAGAATGCCCGCAATTCTGATTTGCCTCTGGTAAGCACGTCATCATCCTTAAGCCGCAAAGCCAAGTTTTTCTCACCATCTCAAGTGACCAACTTCGGAACAAAAGGTCTCCCACCACCAAAGGTATCCTTGAATGAGAGCCACAGTCAAAACCAAAAGTTTCTAGTGAACAACGCTGCAACTGAAAACAACGTTTGTCTAAGCCAACGTCTAGATTCTACGGTAGCACACCCTGTGCTAGCTGCTTCAGTGGATCAAAACCACCCTGAAACTGAGTACCACGATTTCATTAAAAAGTTTGTGGAAAACTGTGACAATTTTGATTTGTCTAAAAATGAAATTAATCCTGGTGATGTTGATCGATACTGTGAGATGCTAAGAGCAATTCTAGATGGCAACAACTCCACTCCTTGGGAATTTGATATGGACAACACCAACATAAGGATTGACTGA 1107 0.4065 MIFHHECRFKLIMAKAKMPGMDALSFLDIVLEKDIPVIFIYSGGFDDVTQKALATGLCYFLKEPICANDLKYLWQHVYHSRAHSAKKIQNAYFQNTKYHAKGLENMKMKQVLRGNGERNKDGNEDMAKKKKIVDENTEHGSLRSTQMEFNNSYYSSEEKRAIVWTPELHLKFTEAIHMLGGENRARPKQILSHMNEPLLTVRQVASHLQKHQLRLKRKENARNSDLPLVSTSSSLSRKAKFFSPSQVTNFGTKGLPPPKVSLNESHSQNQKFLVNNAATENNVCLSQRLDSTVAHPVLAASVDQNHPETEYHDFIKKFVENCDNFDLSKNEINPGDVDRYCEMLRAILDGNNSTPWEFDMDNTNIRID 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02611 368 ProSiteProfiles Response regulatory domain profile. 1 78 IPR001789 GO:0000160
Cca02g02611 368 Gene3D - 1 99 - -
Cca02g02611 368 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 159 213 IPR006447 GO:0003677
Cca02g02611 368 MobiDBLite consensus disorder prediction 115 138 - -
Cca02g02611 368 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 299 IPR045279 GO:0009736
Cca02g02611 368 Gene3D - 156 218 - -
Cca02g02611 368 SUPERFAMILY Homeodomain-like 158 217 IPR009057 -
Cca02g02611 368 Pfam Myb-like DNA-binding domain 164 211 IPR001005 -
Cca02g02611 368 MobiDBLite consensus disorder prediction 115 141 - -
Cca02g02611 368 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 2 299 - -
Cca02g02611 368 SUPERFAMILY CheY-like 6 86 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02611 Cca-Chr2 47271353 47274022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02611 1 217 Response Regulator Gene Family AT1G68210 33.190 7.61e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca02g02611 Myb_DNA-binding 8.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02611 - - ccaj:109795563 753.436