Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02605 ATGGGGTTGCAGAACGAGTTAAACGACGTGTGGTCAGGGTCGATTCCGCTGTTGGTGTTGGCGCAGGTAGCGACGTGCGTCAACTACCTCCGCTCCATGCTTCTGGCGCTGCTGCAATCGCTGGGGCTGTGCAGATTCCACGGCGACCAGACCGTGGACGAGACCTTCCTGGCCGCAGTCGGATCGGGCCTCGCCGGCCTCATCATGCTCGCCGATCAGCTCGCCCTCACCAACCAATTCTGCTACGAGGGCTGCGCCGGCGCCGACCACCGCTGCGTCTTCTGCCAGAGCACCCTCAAGGACGGGGAGCAGGTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCGGCTGCTTCGACGGCTGGCTCCACCGCTACAACTTCAACTGCCCCCTCTGCCGCTCCCCCCTCTTCTCCGACGACCGCCTCGCCCTCACCCAGCGCCGCCTCGGCCACCAACTCATCTCTTGGTTCTCCCTTCACTGA 486 0.6523 MGLQNELNDVWSGSIPLLVLAQVATCVNYLRSMLLALLQSLGLCRFHGDQTVDETFLAAVGSGLAGLIMLADQLALTNQFCYEGCAGADHRCVFCQSTLKDGEQVRMLPCRHVFHRGCFDGWLHRYNFNCPLCRSPLFSDDRLALTQRRLGHQLISWFSLH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02605 161 SMART ring_2 92 133 IPR001841 -
Cca02g02605 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Cca02g02605 161 Pfam Ring finger domain 91 134 IPR001841 -
Cca02g02605 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 147 IPR013083 -
Cca02g02605 161 SUPERFAMILY RING/U-box 88 140 - -
Cca02g02605 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 159 - -
Cca02g02605 161 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02605 Cca-Chr2 47196236 47197867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02605 1 161 C3H Transcription Factor Family AT1G15100 50.307 1.49e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02605 K16282 - gmx:100797628 258.07