Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02577 ATGGGGGATCACTTTGAGTTGTTGGTTGATCGATTGCTTACTGAATCCACATTAGAAGCTGCGCTTGAAAGCAGGAATAGGTCAATGCTGGCTACATCCTCAGCACTGAATGATGCAAAAATTGATCTCAATTTGAAGAAGATGGGTATGGATGATATAAAATGTCCAGGGAAACTGGTAGAATGCAGGATTTGTCATGATGATGATGAAGATTCCAATATGGAGACACCCTGCTCCTGTTGTGGTAGTTTGGAGTACGCCCACCGCAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAAATATGCCACCAGCAGTTCAAGCCTGGTTATACTGCTCCTCCACCACTCTTTCAGTTTGGTCGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGATTTGAATAGTACTCATTTGGTTAGCATGGTCCCCACAGACCAGAATCTTACGAGTTCTAACTATGATCAGTATTCAGCCTCTGCTACAGGAAGTTTGATTTGCTGTCGTTCAATTGCTGTCATTTTCATGGTTCTTCTGATTTTAAGACACACACTTCCCCTCGTAATTAGTGGAAATAAGGAGTATTCTTTCCCACTCTTTTTGCTGTTATTATTTCGGACTGCCGGAGTTGTTCTTCCCATATACTTCATGGTTAGAGCTGTGGCATTAATCCAGCGGCATCGGAGACAGCATCGAGAGCATCTTAATTCCTCAGCCAGTTCATCTGATGATGAAAGCGAGCAAGCAGATTTACAGCCTCAGCCTCATGTCATACATGTACTGTAA 810 0.4296 MGDHFELLVDRLLTESTLEAALESRNRSMLATSSALNDAKIDLNLKKMGMDDIKCPGKLVECRICHDDDEDSNMETPCSCCGSLEYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTSSNYDQYSASATGSLICCRSIAVIFMVLLILRHTLPLVISGNKEYSFPLFLLLLFRTAGVVLPIYFMVRAVALIQRHRRQHREHLNSSASSSDDESEQADLQPQPHVIHVL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02577 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 113 IPR013083 -
Cca02g02577 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Cca02g02577 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Cca02g02577 269 SUPERFAMILY RING/U-box 60 112 - -
Cca02g02577 269 MobiDBLite consensus disorder prediction 241 269 - -
Cca02g02577 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Cca02g02577 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Cca02g02577 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 266 IPR033275 -
Cca02g02577 269 PANTHER OS01G0121200 PROTEIN 1 266 - -
Cca02g02577 269 SMART ringv_2 61 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02577 Cca-Chr2 46883788 46885794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02577 51 108 C3H Transcription Factor Family AT2G37950 45.902 1.02e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02577 - - gmx:100792304 509.99