Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02556 ATGGATTCAGTGCCTGCTGATGTATCTAATTCACATCCTATTAAAGATCCACCCACTTCACCTCCTGCTAAGGAGATTGATGAACAAGCTTCTGCTTCTGTAGTCTCTGGGCAAGATAATTCTGCACATGATGCATCATCTAGGCTATCTCCGACTGGCATATCGTCTTGGGCCAAATTGAAAATTTCTCAGCCATTTACTGGCTCCCAAGATGACTCGTCAAGTGGGAATGCTGGGAAATCAACTTTTGCACGCATCACTAGTAATTTGGGGTTGAGGTTGTCCCCAAAATCTCCTGTGGCAGATGACAGTTCCAATGAAACAGCTGTACAATCTAATTTGTTTGGAACTATCACGAAAGGCCTGGTTGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAAGCACGCCATGTTGTTTCACAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGTGACTTGAGCTCTGGGTTTTTCAGTTATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAAACTCACCATAAGGGTAAATACAAGGTTTATAACCTTTGTTCTGAGCGGTTGTATGATGCATCGTTATTTGAGGGAAAGGTGGCTAGCTTTCCATTTGATGACCACAATTGCCCACCAATTCAACTGGTTATATCATTTTGTCAAAGTGCTTACTCGTGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGGTTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTATTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGTGAAAACCCACCTGCCCGCAGGTGCATGCTTCGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCTATAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGATCTTCTGCCAGAAGATTTTTGGTTTAGTGCGCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCAGGAGAGCCTGGTCTTACACAGTTGGCCGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTATTGAACACCAGTGATCTCGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTTATGGTTGAGGTTGTGCTGGCGGATTATGATGGCAATGTTGTAACTTCCAAACCAGAAACTACAACAAAGAAATCAGATGAGAGTTCAAGTAACAGTTCTGCCAGTCCCGCCCCAGAAGAAAGTAGCAGCCCTGCACAGAATGCAGACAAAGAATCAGAGAGTAATGATAAAGATGATGTGTTTTCAGATGGCGAGGCAGAGCAATCTGGTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTAAAAATGACAGTAGAGTGTCCGAATCCAACAGAACTTCGAATCAAGTTGCAAATTTATCACATGCAACAGAACAAGTTTCCTTGGGAAACAAGAGCTCTACTCCTCCTACTCATAGCGCTAGTGAGCCAAGAAGTAATGTTGACGGAAGATCAGTGTCCAGTCTCGGGGTGCCCAGCGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACCTTCGGAGATGATGAAGACTACGAAAGTGATTGA 1869 0.4232 MDSVPADVSNSHPIKDPPTSPPAKEIDEQASASVVSGQDNSAHDASSRLSPTGISSWAKLKISQPFTGSQDDSSSGNAGKSTFARITSNLGLRLSPKSPVADDSSNETAVQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGFFSYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLVISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTQLAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFMVEVVLADYDGNVVTSKPETTTKKSDESSSNSSASPAPEESSSPAQNADKESESNDKDDVFSDGEAEQSGSSRSKQTKAPSEAVETVKNDSRVSESNRTSNQVANLSHATEQVSLGNKSSTPPTHSASEPRSNVDGRSVSSLGVPSAESEFKAMAADASVFTFGDDEDYESD 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02556 622 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 18 622 - -
Cca02g02556 622 MobiDBLite consensus disorder prediction 515 534 - -
Cca02g02556 622 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 260 299 IPR000387 GO:0016311|GO:0016791
Cca02g02556 622 MobiDBLite consensus disorder prediction 464 499 - -
Cca02g02556 622 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 18 622 - -
Cca02g02556 622 ProSiteProfiles C2 tensin-type domain profile. 332 459 IPR014020 -
Cca02g02556 622 MobiDBLite consensus disorder prediction 1 50 - -
Cca02g02556 622 MobiDBLite consensus disorder prediction 543 595 - -
Cca02g02556 622 CDD PTP_PTEN 156 320 IPR045101 GO:0016791
Cca02g02556 622 MobiDBLite consensus disorder prediction 31 50 - -
Cca02g02556 622 SMART PTEN_C2_2 330 458 IPR014020 -
Cca02g02556 622 MobiDBLite consensus disorder prediction 500 514 - -
Cca02g02556 622 ProSiteProfiles Phosphatase tensin-type domain profile. 146 325 IPR029023 -
Cca02g02556 622 MobiDBLite consensus disorder prediction 464 596 - -
Cca02g02556 622 Gene3D Protein tyrosine phosphatase superfamily 131 328 IPR029021 -
Cca02g02556 622 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 159 327 IPR029021 -
Cca02g02556 622 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Cca02g02556 622 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 401 458 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02556 Cca-Chr2 46676447 46686734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02556 36 622 Protein tyrosine phosphatase (PTP) family AT3G19420 69.580 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02556 K01110 - gmx:100784003 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02556 02 46676447 46686734 Cca02g02556 02 46676447 46686734 ECH
Cca06g01493 06 29868982 29878958 Cca02g02556 02 46676447 46686734 PCT