Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02542 ATGGGTAGCATTGAATCTGAAAGAACAACAGTAGGATGGGCAGCAACAGACCCTTCAGGGATTCTCTCCCCATACACCTTCACTTTAAGAAACACAGGCCCTGATGATGTTTACATCAAAGTTCACTACTGTGGAATTTGCCATTCCGATCTCCACCAGATTAAGAACGATCTTGGCATGTCCAACTATCCCATGGTTCCTGGACATGAAGTGGTTGGCGAGGTACTCGAGGTGGGGCCTAACGTTAGCAGGTTCAAAGTGGGAGAAATTGTTGGGGTTGGACTCTTGGTAGGTTCCTGCAAAAACTGCAGGCCATGTCAATCAGACATTGAGCAATACTGCAACAAGAAGATCTGGTCTTACAACGATGTTTATATCGATGGAAAGCCCACCCAGGGTGGTTTTGCCGAAACCATGATCGTTGAGCAAAAGTTTGTGGTGAAAATACCAGAGGGTATGGAACCGGAGCAAGTGGCACCGTTGTTGTGTGCGGGTGTGACTGTGTACAGTCCGTTGGCACATTTTGGGCTGAGAGGAAGTGGGCTTAGGGGTGGAATATTGGGCCTTGGAGGAGTGGGGCACATGGGGGTGAAAATAGCAAAGGCACTTGGGCATCATGTGAGTGTGATAAGCTCTTCTGATAAGAAGAAACAGGAGGCCCTAGAACACCTTGGAGCAGATCAATATCTTGTTAGCTCTGATGCCACTGCCATGCAGGAAGCTGGTGATTCACTTGACTACATAATTGACACAGTGCCTGTGGGTCACCCTCTTGAGCCTTATCTCTCATTGCTAAAACTTGATGGCAAGTTGATCTTGATGGGGGTCATCAACACGCCTTTGCAATTCGTTAGCCCCATGGTTATGCTAGGTAACTTTTTCATAGGGTAA 891 0.4747 MGSIESERTTVGWAATDPSGILSPYTFTLRNTGPDDVYIKVHYCGICHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGPNVSRFKVGEIVGVGLLVGSCKNCRPCQSDIEQYCNKKIWSYNDVYIDGKPTQGGFAETMIVEQKFVVKIPEGMEPEQVAPLLCAGVTVYSPLAHFGLRGSGLRGGILGLGGVGHMGVKIAKALGHHVSVISSSDKKKQEALEHLGADQYLVSSDATAMQEAGDSLDYIIDTVPVGHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLGNFFIG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02542 296 CDD CAD1 11 296 - -
Cca02g02542 296 Gene3D - 13 163 - -
Cca02g02542 296 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 4 292 - -
Cca02g02542 296 Pfam Zinc-binding dehydrogenase 191 289 IPR013149 -
Cca02g02542 296 PANTHER ALDEHYDE REDUCTASE 4 292 - -
Cca02g02542 296 SUPERFAMILY GroES-like 16 181 IPR011032 -
Cca02g02542 296 Gene3D - 164 291 - -
Cca02g02542 296 Pfam Alcohol dehydrogenase GroES-like domain 34 149 IPR013154 -
Cca02g02542 296 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cca02g02542 296 SMART PKS_ER_names_mod 20 290 IPR020843 GO:0016491
Cca02g02542 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 292 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02542 Cca-Chr2 46565756 46567926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02542 1 296 Monolignol Biosynthesis Gene Families AT3G19450 77.778 5.96e-156 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02542 K00083 - gmx:100777558 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02542 02 46565756 46567926 Cca02g02542 02 46565756 46567926 ECH