Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02530 ATGGAGGAGGCCAAAGAGGAACTCATCACAGGGACCAGTTTCTCTCAGTTACTGTTTGGAGATGACGATCATCATCAAACTGCATTGCCTCTTGCCGTCGACCAGGACCACTCTTGCACTTACAACCTTACCCGTTCTCCTCTTTTCTCCATTCACAACACACCCAAAATGCTATGCTTCGCCAACCATCAAAGCCAACAAGGCCTTTTGCTTCCTCAAACCAACGTAACCCCTCAGAAATCTGTCATCACTTCTAGTGACTCCTCTTCTGCTTCTTCCTGCAACTACACCAACACCTGCTCCAATTCCTTACCTAAGTCCAATAGTTTGCAGAAAAAGAGAAATGGGTTGGGAAAAGAAGCAGTGACCAAGGTGGGTGTTGGAGGGCAGAGACAACCTAAGAAGACCAAAGCAGAGAACCCCACTTCAACCGGACATGCAAAGAGGAAGGAGAAGCTCGGGGAACGAATCGCAGCGTTACAACAACTTGTTTCTCCCTTTGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGCTATATAAGATTTCTACATGATCAAGTTCAGGTTCTGTGCTCTCCTTACCTGCAAAGTTTGCCTTCCTCGTACCATCAAAATCACCATGGGGACGGAGATAACAATGAAGAGGAAGTGAGGAAGGATTTGAGGAGCAGGGGACTGTGCTTGATCCCTGTGGGGTGCACCATACACGTGGCCGGTAGCAATGGTGCTGATTTTTGGTCACCTGCTGCAATAGGGAGCAATGTTTCACCATCAGCCAAGCCAAGCAGTGAAACAAAACCAATGAATCCTTTTCAAAATTTGTAG 834 0.476 MEEAKEELITGTSFSQLLFGDDDHHQTALPLAVDQDHSCTYNLTRSPLFSIHNTPKMLCFANHQSQQGLLLPQTNVTPQKSVITSSDSSSASSCNYTNTCSNSLPKSNSLQKKRNGLGKEAVTKVGVGGQRQPKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQSLPSSYHQNHHGDGDNNEEEVRKDLRSRGLCLIPVGCTIHVAGSNGADFWSPAAIGSNVSPSAKPSSETKPMNPFQNL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02530 277 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 53 244 - -
Cca02g02530 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Cca02g02530 277 CDD bHLH_AtbHLH_like 148 193 IPR045239 -
Cca02g02530 277 Gene3D - 144 207 IPR036638 GO:0046983
Cca02g02530 277 MobiDBLite consensus disorder prediction 80 114 - -
Cca02g02530 277 MobiDBLite consensus disorder prediction 80 151 - -
Cca02g02530 277 MobiDBLite consensus disorder prediction 257 277 - -
Cca02g02530 277 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 53 244 - -
Cca02g02530 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02530 Cca-Chr2 46477366 46479866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02530 148 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 57.547 1.67e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02530 - - gmx:100809317 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02530 02 46477366 46479866 Cca02g02530 02 46477366 46479866 ECH