Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02527 ATGATGATCAAAGAAGATGAAACAACTCTTACAACATCCAAAGAACAACAAGGTGAAGTAATGAACGGAGACAAGGACAATTATGGAAGCGAAGATGACAATCCCAAAGAGTGGTTGAACCTGAGCATAGGAGGCACTTCACTCTCAAATGCTGGAGACTCTGATTCACAATCAAGACCATCCACTGCCAAAGTTTTTTCATGCAACTTCTGCATGAGGAAGTTCTTCAGTTCACAAGCATTAGGAGGTCATCAGAACGCCCACAAGAGGGAGAGGGGAGCTGCAAGAAGATACCAATCTCAGAGGTCCATGGCTATAATGGGATTCTCCATGAATACACCCATGTTTCGGTCACTTGGTGTGCAGCCTCATTCACTCGTGCAAAAGCCATGCAGAGGTGGTACTATGGTGGCACCGAGCTTTCATGATGCACATGCAAGGCTTGGGGTGGCGTGGACACCTTTCTCGTCTGAGGATCAAACGGATATGGTGTGGCCAGGAAGCTTTCGCTTGGTTCCACAACAGCCTCAGCCACCACAGGAGCCACTCAAGCTTGATTTAGACCTCAGACTCTGA 576 0.4757 MMIKEDETTLTTSKEQQGEVMNGDKDNYGSEDDNPKEWLNLSIGGTSLSNAGDSDSQSRPSTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRSMAIMGFSMNTPMFRSLGVQPHSLVQKPCRGGTMVAPSFHDAHARLGVAWTPFSSEDQTDMVWPGSFRLVPQQPQPPQEPLKLDLDLRL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02527 191 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 191 - -
Cca02g02527 191 MobiDBLite consensus disorder prediction 19 33 - -
Cca02g02527 191 MobiDBLite consensus disorder prediction 1 44 - -
Cca02g02527 191 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Cca02g02527 191 Gene3D Classic Zinc Finger 48 112 - -
Cca02g02527 191 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 191 - -
Cca02g02527 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Cca02g02527 191 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02527 Cca-Chr2 46445721 46447161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02527 53 179 C2H2 Transcription Factor Family AT1G24625 40.000 7.74e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02527 - - gmx:100811125 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02527 02 46445721 46447161 Cca02g02527 02 46445721 46447161 ECH