Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02525 ATGACTAGTCCAACTAGAGAATTGACCAGCCATAGCGACGGTACCGCGGAGCGGATGGGAACTGAACAATGTGAATTTTCTGAAAAAACACTGATAGGCTCTGAATGTTTAGGCAGAGAACAAAAGGAGATTGATACTGTGTTGGCCAGTTCAGTTATTGACGAAAAATCAAATCAAGTTTCTGCCAATGTGGCGGAGAATTCTGTTATTCTGCTGGCCGCCCCACCGCAACATGATTTGGAAAAGACTTGTCAGACTGTAGAAGGCTCAAGCCTTCAACAAAGTACTGGTGAACAAGCCTCTGTTCCTTTATCTAATGACCAGCCTGAAAACAAATGCCAACCATTGTCTGAAAATGTTCTAAGTGAACCCTTAGAATCCGTTCCTACCTCTGCTGATGATGGCCAAATGCAATCCAGTGCGGCTCAATTGAATGCGAGTTCTGCGAATGAATTGTTGGATCCCCCTTCTGGAGATGTTGTGAACAATATTAGTTCCAATTGCTCAGAAAGAATGTCAATTAGTCCAACTCATTTGCAATTGAGGCGCAGGGGTAAAAAGAACTCTAAATTATTGAAGAAGTATATGCTACGGTCAAGTGACAGAGCTTTGCGTTCAAGAACAAAAGAAAAACCTAAAGAACCCGAACCAAGTAGTAATTTGGTCGATGGTAATAATGATGGAGTgaagaagaaaagtgggaggaagaagaaaaagaaACGAGAGGAGGGAATTACTGATCAATATTCTAGAATCAGATCTCACTTAAGATATTTATTAAACCGAATAAGTTATGAGAAAAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGTATGGAAAAGTTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCTGAAATTCTTCGACGCAAATTAAAAATTAGGGATCTATTTCGAAATTTGGATTCATTGTGTGCTGAGGGAAAGCTTCCAGAATCTTTGTTTGATTCTGAGGGAGAGATTGACAGTGAAGATATATTCTGTGCAAAGTGTCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTCTGTGACGGTGTTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCGCCTGATGATGAGGGTTGGTTATGCCCTGGATGTGATTGCAAAGACGACTGCATGGACCTTGTCAATGACTCCTTTGGAACTAATCTCTGTATTAGTGACCCCTGGGAGAGGGTCTTTCCTGAAGCTGCTGGAAATAATATGGACAACAACTTGGGACTTCCATCtgatgattctgatgatgatgattataatcctaatggtccagaggatgtgaatgttgaAGGAAATGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAACTGGAGGGTTCACATGAGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGATCCCGAAGCCCCAGATGTCGACTGTAAAGTCAATGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTGCAATTGACGATAACACGTCCCCTGGACAGGATGGAGACATATCTGCATCATTGGATGATGTTAAGTACTTGAAAAGTTCTAGCAAACAAAAGGGTAAAGTTGGTAAGAAGCTACCTATGGCTGATGAACTGTCATCTTTATTACAGCCAGATTCTGGCCAAGAGGGTTCCTCTCTTGTTTCTGGAAAAAGACACGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACGTACCACAGTGATACTAGTGATGATGATGATTGGACTGACACTGCTACTCCAAGTAGAAAAAAGAAACTCACCAGCAATGTGACTCCACTGTCACCAAACGGAAATGCTCCAAATAATTCTGTGCATGTTCCTAAGAGGAATGCCCATCAGAATAAAGCTGAAAATATAAATAATTCACCCACTAAATCACGTGATGGCCGTGTGAAATCTGGTTCTAGGAATAGAAAGTCTGGATCTTCAACACACAAAAGACTAGGAGAAGCTGTAGTTCAGAGACTCCACAAATCGTTTAAAGAAAATCAGTATCCAGATCGAACAACAAAAGAAAGATTGGCACTAGAACTAGGGCTTACTTATCAGCAGGTTACCAAATGGTTTGACAATACACGTTGGAGCTTCCGTCATTCATCACAAATGGAAACGAAATCAGGTAGAAATGCTTCACAACAAGCTACTGATGGCAGAACTGAAAATGAGGAGAGGAAATGTGAATTAATGTCCCCGGAGCTCAGTGGAGAAAAATCAAAAACCCCAAGCTCTAGAAAAAGGAAACATTTCTCAGAACCCCAAGCATCTGAAGCACGACTGGATATCAATGGATCAGCAACAAGTTCACCAAATGCTCATGAAATTCAAACAAGCAATAAAATGAAGACAAGGAAAAGGAAATGA 2472 0.3981 MTSPTRELTSHSDGTAERMGTEQCEFSEKTLIGSECLGREQKEIDTVLASSVIDEKSNQVSANVAENSVILLAAPPQHDLEKTCQTVEGSSLQQSTGEQASVPLSNDQPENKCQPLSENVLSEPLESVPTSADDGQMQSSAAQLNASSANELLDPPSGDVVNNISSNCSERMSISPTHLQLRRRGKKNSKLLKKYMLRSSDRALRSRTKEKPKEPEPSSNLVDGNNDGVKKKSGRKKKKKREEGITDQYSRIRSHLRYLLNRISYEKSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLKIRDLFRNLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQLCLDPPLLTEDIPPDDEGWLCPGCDCKDDCMDLVNDSFGTNLCISDPWERVFPEAAGNNMDNNLGLPSDDSDDDDYNPNGPEDVNVEGNESSSDESEYASASEKLEGSHEDQYLGLPSEDSDDGDYDPEAPDVDCKVNEESSSSDFTSDSEDLAAAIDDNTSPGQDGDISASLDDVKYLKSSSKQKGKVGKKLPMADELSSLLQPDSGQEGSSLVSGKRHVERLDYKKLYDETYHSDTSDDDDWTDTATPSRKKKLTSNVTPLSPNGNAPNNSVHVPKRNAHQNKAENINNSPTKSRDGRVKSGSRNRKSGSSTHKRLGEAVVQRLHKSFKENQYPDRTTKERLALELGLTYQQVTKWFDNTRWSFRHSSQMETKSGRNASQQATDGRTENEERKCELMSPELSGEKSKTPSSRKRKHFSEPQASEARLDINGSATSSPNAHEIQTSNKMKTRKRK 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02525 823 MobiDBLite consensus disorder prediction 735 753 - -
Cca02g02525 823 SUPERFAMILY FYVE/PHD zinc finger 329 397 IPR011011 -
Cca02g02525 823 ProSiteProfiles 'Homeobox' domain profile. 676 736 IPR001356 GO:0003677
Cca02g02525 823 MobiDBLite consensus disorder prediction 618 665 - -
Cca02g02525 823 Gene3D - 677 749 - -
Cca02g02525 823 CDD PHD_PRHA_like 339 391 IPR045876 -
Cca02g02525 823 SMART HOX_1 674 740 IPR001356 GO:0003677
Cca02g02525 823 MobiDBLite consensus disorder prediction 464 483 - -
Cca02g02525 823 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 136 784 - -
Cca02g02525 823 MobiDBLite consensus disorder prediction 1 17 - -
Cca02g02525 823 ProSiteProfiles Zinc finger PHD-type profile. 337 394 IPR019787 -
Cca02g02525 823 MobiDBLite consensus disorder prediction 754 769 - -
Cca02g02525 823 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g02525 823 Pfam Homeodomain 688 732 IPR001356 GO:0003677
Cca02g02525 823 MobiDBLite consensus disorder prediction 687 703 - -
Cca02g02525 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 396 IPR013083 -
Cca02g02525 823 ProSitePatterns Zinc finger PHD-type signature. 340 391 IPR019786 -
Cca02g02525 823 PANTHER HOMEOBOX PROTEIN HAT3.1 136 784 - -
Cca02g02525 823 MobiDBLite consensus disorder prediction 421 703 - -
Cca02g02525 823 Pfam PHD-finger 339 394 IPR019787 -
Cca02g02525 823 CDD homeodomain 690 737 IPR001356 GO:0003677
Cca02g02525 823 MobiDBLite consensus disorder prediction 194 217 - -
Cca02g02525 823 MobiDBLite consensus disorder prediction 735 823 - -
Cca02g02525 823 SMART PHD_3 339 392 IPR001965 -
Cca02g02525 823 MobiDBLite consensus disorder prediction 583 617 - -
Cca02g02525 823 MobiDBLite consensus disorder prediction 83 152 - -
Cca02g02525 823 MobiDBLite consensus disorder prediction 159 176 - -
Cca02g02525 823 SUPERFAMILY Homeodomain-like 673 739 IPR009057 -
Cca02g02525 823 MobiDBLite consensus disorder prediction 82 246 - -
Cca02g02525 823 MobiDBLite consensus disorder prediction 794 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02525 Cca-Chr2 46429414 46439445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02525 182 733 Homeobox Transcription Factor Family AT3G19510 44.764 8.56e-130 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Cca02g02525 PHD 2.4e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02525 - - gmx:100306715 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02525 02 46429414 46439445 Cca02g02525 02 46429414 46439445 ECH