Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02523 ATGACTTCTAACCGTCATCTTCCCTCCGGAATCCTCTTCTTTAAGATTATTCTCGATGCAACTCTTCAACATGGAAAACTTAAAATTCCAAACAAGTTCACTAAAAAATATGGCGGTAATCTGTCAAACCCAGTGTTTCTTAGGGCTCCAGATGACATTAAATGGGAAGTATATTGGAAAAAACATGATGACGGTGGTATTTGGCTTCAAAAGGGTTGGAAGGAATTTGCAACCTATTACTCCCTAAGCCATGGACATTTGGTGTTGTTTAAATACCAAGAAACATGTCATTTGGAGGTACGCATATTAGATGAGAGTGCCCTTGAAATTGATTACCCATTAAATGGTACTCAGAATGAAAATGATAGCGTTGAGCACATTAGCAACAACCAGCCTGTTGAAGATTTGGACGAGGTGACTCTAAGTCCTCAACCTCGTAAAAAATTGAGGACACGCTCAAGTGGAGTTGTTGGACAAAGCTCCAATTTGCCGGAGCATGTTGAAACTAAAGTTGAACATTCTCAAGAGGATAGGGGTGGTGCCACTAAAAGCGTAAAAGTAGAGCAGGTGACTTCTAAAGTTGTTGAAACCTCTAGATCTAAAGCTCCCTCTTTTTTTATTGTCTTGAAGGCTTCCTATGTGAACGGACATTCCGTGGTCATTCCATCGAAATTTGTAAAAAAGTATTTAAAAGAAAAGCGAAGTGATGATATCCTGCTTCGGGTCTTGGATGGGAGAACTTGGACTGTTAATTTTAGGAATGGCAGATTTTGCGCTGGATGGAATAAGTTTGCCTCGGATAATCATTTGAAGGAGGGGGATGTTTGTGCTTTTGGGCTCACCAAGAGTCAAGGCCACTGCTTTGAAGTAACAATCATTCGGATTTCAGAAGAAACACATTTATCAGGAAATGGAGACTCTGGGAGGATCCCAGATTTGAAATGTGTAACTGACATCCCTATCAAAGCTATGCAAGAAGCTAGGAAGTTCTCCTCAGAAAACCCGTTTTTCATAGTCAATATAAGAGCAAATGATGAAAAGGATTTCAGACCGCGTGTACCAGTTTCCTTCATGAAAAAATACGTGAAGAACAAGCAGGTTGTGACCTTACAATTTGGAAACAAATTATGGCCAGTACACTTGATCGGTACGGTTCGGACAAAGTTGTCTAAGGGTTGGAGCCAATTTGTGAATGCAAGCAAGGTCGGAGCTGGAGATATTTGCGTCTTTGAGTTAATCAACAAAGTAGATACAGTGCTTCATGTCCACATTTATAGAGACCACTCTTAG 1290 0.4039 MTSNRHLPSGILFFKIILDATLQHGKLKIPNKFTKKYGGNLSNPVFLRAPDDIKWEVYWKKHDDGGIWLQKGWKEFATYYSLSHGHLVLFKYQETCHLEVRILDESALEIDYPLNGTQNENDSVEHISNNQPVEDLDEVTLSPQPRKKLRTRSSGVVGQSSNLPEHVETKVEHSQEDRGGATKSVKVEQVTSKVVETSRSKAPSFFIVLKASYVNGHSVVIPSKFVKKYLKEKRSDDILLRVLDGRTWTVNFRNGRFCAGWNKFASDNHLKEGDVCAFGLTKSQGHCFEVTIIRISEETHLSGNGDSGRIPDLKCVTDIPIKAMQEARKFSSENPFFIVNIRANDEKDFRPRVPVSFMKKYVKNKQVVTLQFGNKLWPVHLIGTVRTKLSKGWSQFVNASKVGAGDICVFELINKVDTVLHVHIYRDHS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02523 429 MobiDBLite consensus disorder prediction 166 183 - -
Cca02g02523 429 ProSiteProfiles B3 DNA-binding domain profile. 204 296 IPR003340 GO:0003677
Cca02g02523 429 MobiDBLite consensus disorder prediction 119 137 - -
Cca02g02523 429 SUPERFAMILY DNA-binding pseudobarrel domain 11 105 IPR015300 -
Cca02g02523 429 SUPERFAMILY DNA-binding pseudobarrel domain 199 296 IPR015300 -
Cca02g02523 429 MobiDBLite consensus disorder prediction 119 184 - -
Cca02g02523 429 ProSiteProfiles B3 DNA-binding domain profile. 336 428 IPR003340 GO:0003677
Cca02g02523 429 SMART B3_2 336 428 IPR003340 GO:0003677
Cca02g02523 429 SMART B3_2 13 106 IPR003340 GO:0003677
Cca02g02523 429 SMART B3_2 205 296 IPR003340 GO:0003677
Cca02g02523 429 Gene3D - 10 107 IPR015300 -
Cca02g02523 429 PANTHER B3 DOMAIN-CONTAINING 322 427 - -
Cca02g02523 429 PANTHER B3 DOMAIN-CONTAINING 3 294 - -
Cca02g02523 429 CDD B3_DNA 335 426 IPR003340 GO:0003677
Cca02g02523 429 SUPERFAMILY DNA-binding pseudobarrel domain 330 426 IPR015300 -
Cca02g02523 429 CDD B3_DNA 203 294 IPR003340 GO:0003677
Cca02g02523 429 Gene3D - 184 298 IPR015300 -
Cca02g02523 429 Gene3D - 320 428 IPR015300 -
Cca02g02523 429 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 294 - -
Cca02g02523 429 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 322 427 - -
Cca02g02523 429 Pfam B3 DNA binding domain 336 426 IPR003340 GO:0003677
Cca02g02523 429 Pfam B3 DNA binding domain 20 104 IPR003340 GO:0003677
Cca02g02523 429 Pfam B3 DNA binding domain 205 293 IPR003340 GO:0003677
Cca02g02523 429 MobiDBLite consensus disorder prediction 146 165 - -
Cca02g02523 429 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
Cca02g02523 429 CDD B3_DNA 12 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02523 Cca-Chr2 46417249 46419923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02523 322 426 B3 DNA Binding Superfamily AT3G18990 35.185 2.14e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca02g02523 B3 4.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02523 - - ccaj:109813514 879.396