Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02511 ATGCTGCGTTTGTGTTACGCTCCTCTCGATTGCTGCTTCCACCGCCGTGGTGGCCGCGTCGACGCCCTTCTCTGGCACAACGACCTCAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCTCAGGCCAATTACACTCTCGAGGATCAGAGCCAAGTCTTCACCTCTCCCTCCGCCACTTACGTCGGCGTCTACGACGGCCACGGCGGCCCCGAAGCTTCTAGATTCGTCAACAAGCGCCTCTTCCCTTATTTACACAAATTTGCCACTGAGCAAGGGGGGTTGTCTGTGGATGTGATAAAGAAGGCATTTAGTGCCACGGAGGAGGAATTCTTGCATTTGGTCAAGCTATCATTGCCCATTAGTCCTCAGATTGCTTCCGTGGGATCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTATGTTGCCAACCTTGGAGACTCGAGAGCAGTTCTTGGCAGGAGGGATACAGAGAGAAGGAACAGTCCGGTGGTGGCACAGCGCTTGTCAACTGACCATAATGTAGCTGATGAGAAGGTGAGAAGAGAAGTTGAAGCTCTCCATCCTGATGACTCGCACATTGTGGTTTACAGCCGTGGGGTTTGGAGGATTAAGGGCATTATACAGGTGTCAAGATCTATTGGTGATGTATATTTGAAGAAACCTGATTTCTACCGAGACCCAGTCTTTCAGCAATATGGGAATCCTGTTCCTTTGAAGCGTCCTGCAATGACAGCTGAACCATCAATAATTATTAGGGAGCTCGAGTCAGAGGATTTATTCTTGATATTTGCATCCGATGGCCTCTGGGAACAATTAAGTGATGAGGCAGCTGTTCAGATAGTTTTCAAATATCCAAGAGCTGGAATTGCCAAGAGACTAGTGAGAGCTGCACTTCAAGAAGCTGCAAAGAAGAGAGAGATGAGATATGATGACATAAAGAAAATTGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTAATTGTAATCTATCTTGATCACCATGCGGGCTCCTCTAATGGCAGAGTGAAGCAAACCACTGTTGGCTACACAACTGCCCCTGTTGATATTTTTTCCCTAAATGCGGATGAGGCAGAAAAGAGTATGCTTGGTACAGTTGCCTAA 1143 0.4777 MLRLCYAPLDCCFHRRGGRVDALLWHNDLKPHASGDFSIAVAQANYTLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDTERRNSPVVAQRLSTDHNVADEKVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQYGNPVPLKRPAMTAEPSIIIRELESEDLFLIFASDGLWEQLSDEAAVQIVFKYPRAGIAKRLVRAALQEAAKKREMRYDDIKKIDKGIRRHFHDDITVIVIYLDHHAGSSNGRVKQTTVGYTTAPVDIFSLNADEAEKSMLGTVA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02511 380 SMART PP2C_4 30 336 IPR001932 -
Cca02g02511 380 CDD PP2Cc 47 338 IPR001932 -
Cca02g02511 380 Pfam Protein phosphatase 2C 58 307 IPR001932 -
Cca02g02511 380 ProSitePatterns PPM-type phosphatase domain signature. 62 70 IPR000222 GO:0043169
Cca02g02511 380 SUPERFAMILY PP2C-like 45 340 IPR036457 -
Cca02g02511 380 Gene3D - 26 347 IPR036457 -
Cca02g02511 380 ProSiteProfiles PPM-type phosphatase domain profile. 36 338 IPR001932 -
Cca02g02511 380 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 375 - -
Cca02g02511 380 PANTHER ALPHABET, ISOFORM E-RELATED 4 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02511 Cca-Chr2 46301104 46304453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02511 18 345 PP2C-type Phosphatase Gene Family AT3G51370 57.738 5.91e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02511 - K01102 gmx:100812137 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02511 02 46301104 46304453 Cca02g02511 02 46301104 46304453 ECH
Cca06g01511 06 30084687 30089019 Cca02g02511 02 46301104 46304453 PCT