Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02510 ATGGTCGCCCCACTGTCGAATAGAGGTGCAGATTCGTTTCCGCACAAACAAAAGCGAATGGTTAGAGGAGGCATCACCAAAGCAAACTCGTTGCTTCTCGGGGCAGCTAAGAGAGCAAAGAGTGGACTTAGCAAATTCTCAGGCACTGCTGCTGCAGAAAACTCTGGAGGAGTTAAGAGTGGTGGGAAGATAGAGGGTTCATCGGATTGGTGGGTCCCACACCCACGCACAGGAATTTACTTCCCAAAAGGGCATGAGTGGGTGATGGAAGATGTTCCAGCAGATGCAGCTCGTTTAAACCAGACTTATTGGTTCAGAAATGTTGATGGGTGGCAAGAAAACGGCCATTCATGGGTAAAGATGGAAAACAGTCCAGCTTCTTCGAACTTTCTGAGAGGAGCACGGATTCAGTGTATGACGAGCGCTTCGGAGCTATTCCACACCAGAAGGCATCGATTGGGACGAAATGCTCTCGATCTAGGGTTCGACTCAGAACTCCACGCCGCCGATTCCCTCCGCCGCCACTACAGCGTCCGCCGCCTCCGTCACCATCCGGAGCGTGCGTCTGACAGAATTGATGTGAGGTATCGCCGCTCTTTCTTGAGTGAAAGCGTTGATTCTGCTGAAAATGTAAGAGGTGGTCTTGGAGGGACTGCCACTGAGAGACTACCCGTAGGTGTGGTTCTTGCGCGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAACCTTTATCTACAAACAGGCAATATGGTAGAGATTCAGTGGGTGAGGATGGAGCAAGTGAATCATCAAATGAAGTTCCAACTGAGGCCTCTCTAGTTACTGACTTGACTTCACAAATGGGAAGGTCCCAGTTCTTGCAAGAACTGAACAAAAAGCCTCCTGGACTTTCTCAGGAGGCCTTGGACTGTTTGCATCAGGAAGTTTTTAGCAGCAGCGAGATAGGATCGGAGTCCAGGGTACTGCAAGATTGTGGTATATGCCTGGAATCTTTCACAGATGGAGATGAGCTGATACGTTTGCCATGTGAACATAAATTCCACTCTGTTTGTTTGGATCCTTGGGTTCGCTGCTGTGGTGACTGTCCATACTGTCGAAGATGTATAGTTGTAAATACTAACTAA 1122 0.492 MVAPLSNRGADSFPHKQKRMVRGGITKANSLLLGAAKRAKSGLSKFSGTAAAENSGGVKSGGKIEGSSDWWVPHPRTGIYFPKGHEWVMEDVPADAARLNQTYWFRNVDGWQENGHSWVKMENSPASSNFLRGARIQCMTSASELFHTRRHRLGRNALDLGFDSELHAADSLRRHYSVRRLRHHPERASDRIDVRYRRSFLSESVDSAENVRGGLGGTATERLPVGVVLARARLLQRLRGEPLSTNRQYGRDSVGEDGASESSNEVPTEASLVTDLTSQMGRSQFLQELNKKPPGLSQEALDCLHQEVFSSSEIGSESRVLQDCGICLESFTDGDELIRLPCEHKFHSVCLDPWVRCCGDCPYCRRCIVVNTN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02510 373 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g02510 373 SUPERFAMILY RING/U-box 323 371 - -
Cca02g02510 373 CDD RING-H2_PA-TM-RING 323 365 - -
Cca02g02510 373 SMART ring_2 324 364 IPR001841 -
Cca02g02510 373 Pfam Ring finger domain 323 365 IPR001841 -
Cca02g02510 373 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Cca02g02510 373 PANTHER SI:CH211-59O9.10 139 370 - -
Cca02g02510 373 MobiDBLite consensus disorder prediction 245 269 - -
Cca02g02510 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 369 IPR013083 -
Cca02g02510 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 139 370 - -
Cca02g02510 373 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02510 Cca-Chr2 46284606 46296251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02510 139 369 C3H Transcription Factor Family AT1G49850 42.248 5.67e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02510 - - gmx:100814695 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02510 02 46284606 46296251 Cca02g02510 02 46284606 46296251 ECH