Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02509 ATGGGTGATGCATTAAATGAAGTGCATCGCAGAGGTGGTACTCTTGCTGCTTCTCCCAAGAGGGACATTGCATTGTTTGAAGGAGACAAAGATTTTGAGCCCCACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTCATTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCGTGCTCTAGGTATGGAGTTACACCTGAGTCTGACAGTGGGAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCATGTGAAGAGAAAGCCGGATGGAAAGTGGATCATTCATGAATTTATAAAGGAACATAATCATGAACTTTTACCGGCCTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCCGAAAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAGGCAATCTGGTGGCTGTCAAAAAATTGGGTCTCTCTTGGGTGATATAAACTACCAGTTTGACAGAGGCCAGTATTTGGCTTTGGATGagggagatgcccaagttatgcttgagtattttaagcacgtacaaaaggagagtccaaacttcttctattctatagatttaaatgaagagcagcgtttaagaaatctattttggattgatgcaaaaagtatcaatgattatcacagctttaatgatgtagtttcatttgataccacatacataaaaaacaatgacaagttgccatttgcaccttttgttggagtgaaccaccactctcaacctatattgcttggatgtgctttggttgcagatgagactaaaccaacatttgtttggctaatgaagacatggcttagagcaatgggagggcaagctcccaaagttataatcactgatcaagacaaagctttgaagacagcagtggaagaagtctttccaaatgtacggcattgcttttctctttggcacattctggagaggatacccgaaaatctctcttttgtgatcaaacagtataacaacttcttgccaaaatttaacaagtgcatttttaaatcttggacagatgaacagtttgacatgagatggtggaaaatggtcactagatttggactccaagatgatatatgggttcagtcactgtatgatgaccggaaaaagtggatgccaatttacatgggggatacctttttagctggaatgtctactcctcagcgctctgaaagtatgaactctttcttcgacaaatatattcataaaaaaattacccttaaagagtttgttaaacaatatgggataattcttcagaataggtatgatgaggaagccattgcagattttgatacattacacaaacagccagcacttaaatctccttcaccttgggaaaaacaaatgtcaacagtttatacccatacaatatttaagaaatttcaagttgaagttttgggtgtagctggttgtcaatctaggatagaggctggagatggaactattgcaaaatttatggttcaagattatgagaaggatgaagagtttctggtaacttggaatgagttgagctcagaggtctcttgcttctgtcgattgtttgaatataaaggtttcctttgcaggcatgcattgagtgttctccaacgttgtggttgttcaagtgttccatctcattatatcttgaaaaggtggaccaaagatgccaaAATTAAGGAATCAATGGCAGATAGGACAAGAAGGATACAAACAAGGGTGCAACGTTATAATGATTTGTGCAAACAAGCTATTGATTTGAGTGAAGAAGGATCATTATCCGAAGAGAATTACAATGTTGTTTTTCGTGCACTTGTTGATGCCTTGAAGAACTGTGTACTTGTCAATAATTCTAATATCAATGGTGCAGAAGCCAGCAACAGTGCCCATAGCCTTCGTGAAGCAGAAGAAAATCAGGGTGCTCTTGCTTTGAAACCAAATAAAAAGAGGAATGCAGCTAGGAAAAGAAAGGCACAATTAGAGCAGGATGTTATACTTGTTGATGCTCAAGATAGCCTGCAGCAAATGGATAATCTTAGCTCGGACGCAGTAACCCTTAATGGGTATTATGGTTCCCAGCAGAATGTGCAAGGACTGCAAGTACAGTTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCATCAGAGCATGCAAGGCCTGGGTCCTTTGAATTCTATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAAGCATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCAGCTACTACTTTTGGATATAGCCTTCAGGATGAACATGATCCCCAGTTTCATGGCAACAGTTCAAGAAATACTTAG 2430 0.2128 MGDALNEVHRRGGTLAASPKRDIALFEGDKDFEPHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQKIGSLLGDINYQFDRGQYLALDEGDAQVMLEYFKHVQKESPNFFYSIDLNEEQRLRNLFWIDAKSINDYHSFNDVVSFDTTYIKNNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKTAVEEVFPNVRHCFSLWHILERIPENLSFVIKQYNNFLPKFNKCIFKSWTDEQFDMRWWKMVTRFGLQDDIWVQSLYDDRKKWMPIYMGDTFLAGMSTPQRSESMNSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVAGCQSRIEAGDGTIAKFMVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYILKRWTKDAKIKESMADRTRRIQTRVQRYNDLCKQAIDLSEEGSLSEENYNVVFRALVDALKNCVLVNNSNINGAEASNSAHSLREAEENQGALALKPNKKRNAARKRKAQLEQDVILVDAQDSLQQMDNLSSDAVTLNGYYGSQQNVQGLQVQLNLMEPPHDGYYVNHQSMQGLGPLNSMAPSHDGFFGTQQSIHGLGGQLEFRPATTFGYSLQDEHDPQFHGNSSRNT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02509 809 MobiDBLite consensus disorder prediction 662 687 - -
Cca02g02509 809 Pfam MULE transposase domain 255 348 IPR018289 -
Cca02g02509 809 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 724 IPR031052 GO:0006355
Cca02g02509 809 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Cca02g02509 809 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 12 724 - -
Cca02g02509 809 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Cca02g02509 809 Pfam SWIM zinc finger 537 570 IPR007527 GO:0008270
Cca02g02509 809 SMART 26again6 546 573 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02509 Cca-Chr2 46275692 46281357 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca02g02509 MULE 1.9e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02509 - - gmx:100805377 1529.23