Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02501 ATGGCATCCGCGACGGGGCGAGAGTTGTCGAATCCTCCGTCGGACGGCATCAGCAACCTGCGGTTCTCGAATCACAGCGATCACTTACTTGTGTCCTCATGGGACAAGAGCGTGCGTTTGTACGATGCCAGCGCCAATGTGTTGAGAGGAGAGTTCATGCACTCTGGTCCTGTCCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGCCGCCGCCGACAACACTGTTAGAAGGCTGTTGTTCAGCTCCAATAAAGAGGATATTCTTGGAAGGCATGATGCGGCTGTGAGATGTATTGAGTACTCATATGCTGCAGGTCAATTGATCACTGGTAGTTGGGACAAAACCCTCAAATGTTGGGACCCTAGAGGCGCAAGTGCCCAAGACCGCACACTCGTTGGAACATATCCCCAGCCTGAGCGTGTTTACTCCCTCTCTCTCGTTGGACACCGTCTCGTTGTAGCAACAGCTGGAAGACATGTTAACATCTATGATTTGAGGAACATGTCTCAACCTGAGCAGAGAAGAGAATCTTCATTGAAATATCAAACCAGATCTGTGCGCTGTTACCCAAATGGAACTGGATATGCACTTAGTTCTGTTGAAGGCCGGGTTGCCATGGAATTCTTTGACCTCTCAGAGGCTAGCCAGGCAAAAAAatatgcttttaagtgtcacagaaaatcagaagccggaagggatattgtctatccggtaaatgcaattgcattccaccccatATATGGTACATTTGCCACGGGAGGCTGTGATGGGTATGTTAACGTATGGGACGGAAACAATAAGAAGAGACTTTACCAGTACTCAAAATACCCAACTAGCGTTGCAGCACTTTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACATTTGAAGAGGGACCTAAACCCCACGAACAAGATGCTATCTTCGTTCGTAGTGTGAACGAGATTGAGGTCAAGCCGAAACCCAAAGTCTACCCTAATCCTCCAGCGTGA 1014 0.4536 MASATGRELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHSGPVLDCCFHDDSSGFSAAADNTVRRLLFSSNKEDILGRHDAAVRCIEYSYAAGQLITGSWDKTLKCWDPRGASAQDRTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRSVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKPHEQDAIFVRSVNEIEVKPKPKVYPNPPA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02501 337 PRINTS G protein beta WD-40 repeat signature 253 267 IPR020472 -
Cca02g02501 337 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Cca02g02501 337 PRINTS G protein beta WD-40 repeat signature 29 43 IPR020472 -
Cca02g02501 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 275 IPR001680 GO:0005515
Cca02g02501 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 91 123 - -
Cca02g02501 337 PANTHER MRNA EXPORT FACTOR AND BUB3 3 332 - -
Cca02g02501 337 Gene3D - 3 331 IPR015943 GO:0005515
Cca02g02501 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 123 IPR001680 GO:0005515
Cca02g02501 337 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 3 332 - -
Cca02g02501 337 Pfam WD domain, G-beta repeat 15 42 IPR001680 GO:0005515
Cca02g02501 337 Pfam WD domain, G-beta repeat 225 266 IPR001680 GO:0005515
Cca02g02501 337 Pfam WD domain, G-beta repeat 92 123 IPR001680 GO:0005515
Cca02g02501 337 SUPERFAMILY WD40 repeat-like 13 300 IPR036322 GO:0005515
Cca02g02501 337 SMART WD40_4 5 42 IPR001680 GO:0005515
Cca02g02501 337 SMART WD40_4 218 266 IPR001680 GO:0005515
Cca02g02501 337 SMART WD40_4 84 123 IPR001680 GO:0005515
Cca02g02501 337 SMART WD40_4 131 167 IPR001680 GO:0005515
Cca02g02501 337 SMART WD40_4 45 82 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02501 110 299 U-box Gene Family AT2G33340 25.907 6.56e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02501 K02180 - gmx:100808389 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02501 02 46177459 46228609 Cca02g02501 02 46177459 46228609 ECH