Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02499 ATGGAACCTGTTCAACTGATTTCTGAAGAATGGGGTTCTCTTTGTGGATTGCACACAACTGAGGAAGCTGACTTTATGGCTCAGTTGTTTGGTGGTAACTATTCTGTCACAGAAAAGCACTGTGGAAATACCAGTTTTGGCTTTTGGCCTTCCCATGAATCCACAACAGTGACCATGGCAGATACTAACAGCAACTCAAACTTTGTTTCAAATGTTACAGATACTAATTTTTTGTGTTTCTCACAAGGGAGTAGCTCCAGCACTGATAGTGGTGGTAATAACATACTTTCCACTACAAGTAGTGGAAGCTACTCCTGTGATCCAGCATCTAACTTTGACTCTGTGTCCATGCTTTATTCCCTGGGAGATGCCAAATTTAGTCCATATAGTTTTCAGTTGAATGACAACTTAAGCCAACGGATAAATGAAAACACTGATGAAGAGTTAAGTCTAGACCCTGTGGCTCTTGCTGACAACAATTTGCAGGCTAAGAGGGAGTATGAAATCATGGTTTCTGAACCTGTACAAGAGGATGGAAGCAGAAACCTGGAGACCCTGACAAAAAGACTTCGGAGCTCAATAGAGGTCTCAAAAACAGTGAGGAATGCTAAATCGAGGAAAAATCCAAAATCTGCTTCAATGAGCAACGATGAAGATGATAGAAGCTTGAGCCTCCCAAGGCATAGCTGTTTTTCACAAGGTGACTCTAATGCTTCTCTGGAGCCAAATGGAGGGGTATCATCAAAAGATCTTGCATCTCCCAATTCGTATAGAAAATCAAGAGCAACTACCCGCCCTGCCACTGATTCTCAGAGCCTCTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAACCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATACGTTAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGTTCCGACGATCTGTGGATGTATGCTCCAATTGCTTTTAATGGAATAAACATGGGACTAGACCTAAGCATTTCTCCAACCAAAGGAAGATGA 1059 0.4183 MEPVQLISEEWGSLCGLHTTEEADFMAQLFGGNYSVTEKHCGNTSFGFWPSHESTTVTMADTNSNSNFVSNVTDTNFLCFSQGSSSSTDSGGNNILSTTSSGSYSCDPASNFDSVSMLYSLGDAKFSPYSFQLNDNLSQRINENTDEELSLDPVALADNNLQAKREYEIMVSEPVQEDGSRNLETLTKRLRSSIEVSKTVRNAKSRKNPKSASMSNDEDDRSLSLPRHSCFSQGDSNASLEPNGGVSSKDLASPNSYRKSRATTRPATDSQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAFNGINMGLDLSISPTKGR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02499 352 MobiDBLite consensus disorder prediction 226 271 - -
Cca02g02499 352 MobiDBLite consensus disorder prediction 195 276 - -
Cca02g02499 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Cca02g02499 352 CDD bHLH_AtIND_like 267 329 - -
Cca02g02499 352 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 7 347 - -
Cca02g02499 352 SMART finulus 272 321 IPR011598 GO:0046983
Cca02g02499 352 MobiDBLite consensus disorder prediction 211 225 - -
Cca02g02499 352 Pfam Helix-loop-helix DNA-binding domain 276 316 IPR011598 GO:0046983
Cca02g02499 352 Gene3D - 263 324 IPR036638 GO:0046983
Cca02g02499 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 347 - -
Cca02g02499 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 332 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02499 Cca-Chr2 46158135 46159906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02499 10 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.118 1.66e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g02499 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02499 - - gmx:100816788 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02499 02 46158135 46159906 Cca02g02499 02 46158135 46159906 ECH
Cca06g02042 06 35656536 35658129 Cca02g02499 02 46158135 46159906 PCT